RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 PLPPR5Q32ZL2 321 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 SYTL3Q4VX76 610 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 CCDC157Q569K6 752 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 RABL3Q5HYI8 236 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 FGD3Q5JSP0 725 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 C6orf10Q5SRN2 563 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 LIPJQ5W064 366 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 ANKRD34AQ69YU3 496 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 TRNP1Q6NT89 227 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 CAVIN1Q6NZI2 390 aaKnown RBP1.25□□□□□ -2.21
LINC00643-201ENST00000334389 LAYNQ6UX15 382 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 MSANTD1Q6ZTZ1 278 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 SLC46A3Q7Z3Q1 461 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 HAPLN4Q86UW8 402 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 HSCBQ8IWL3 235 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 UNC5BQ8IZJ1 945 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 LILRB2Q8N423 598 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 ANKFN1Q8N957 763 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 WDSUB1Q8N9V3 476 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 CCDC71LQ8N9Z2 235 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 KCTD6Q8NC69 237 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 CCL4L1Q8NHW4 92 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 KIF18AQ8NI77 898 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF671Q8TAW3 534 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 MRGPRDQ8TDS7 321 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 TMEM190Q8WZ59 177 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 LHX4Q969G2 390 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 TRIM63Q969Q1 353 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 SIGLEC11Q96RL6 698 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 SPATA16Q9BXB7 569 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 NPFFR1Q9GZQ6 430 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 LRMDAQ9H2I8 198 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 LRRC40Q9H9A6 602 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 TCF7L1Q9HCS4 588 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 TAS2R10Q9NYW0 307 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 NDUFA13Q9P0J0 144 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 SAMD15Q9P1V8 674 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 RCC2Q9P258 522 aaKnown RBP1.25□□□□□ -2.21
LINC00643-201ENST00000334389 CACNG4Q9UBN1 327 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 COPS7AQ9UBW8 275 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 IP6K2Q9UHH9 426 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 FAM153AQ9UHL3 310 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 NPIPA1Q9UND3 350 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 LIPT1Q9Y234 373 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF443Q9Y2A4 671 aaPredicted RBP1.25□□□□□ -2.21
LINC00643-201ENST00000334389 CSAG2Q9Y5P2 127 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 TNFRSF18Q9Y5U5 241 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 NPTNQ9Y639 398 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 CENPFP49454 3210 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 UNC80Q8N2C7 3258 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 SLC22A1O15245 554 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 HMGB3O15347 200 aaKnown RBP1.25□□□□□ -2.21
LINC00643-201ENST00000334389 PLPP2O43688 288 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 NKX2-2O95096 273 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 MED26O95402 600 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 CRYAAP02489 173 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 TPM3P06753 285 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 SNRNP70P08621 437 aaKnown RBP1.25□□□□□ -2.21
LINC00643-201ENST00000334389 VIMP08670 466 aaKnown RBP1.25□□□□□ -2.21
LINC00643-201ENST00000334389 LINGO3P0C6S8 592 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 SLC35G6P0C7Q6 338 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 COX7A2P14406 83 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 PFKFB1P16118 471 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 GGT1P19440 569 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 APEX1P27695 318 aaKnown RBP1.25□□□□□ -2.21
LINC00643-201ENST00000334389 SDC4P31431 198 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 FDFT1P37268 417 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 HSPA7P48741 367 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 P2RY4P51582 365 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 GUCY2FP51841 1108 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 UBASH3AP57075 661 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 KRTAP10-11P60412 298 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 RPS18P62269 152 aaKnown RBP1.25□□□□□ -2.21
LINC00643-201ENST00000334389 RPL23AP62750 156 aaKnown RBP1.25□□□□□ -2.21
LINC00643-201ENST00000334389 PHEXP78562 749 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 FAPQ12884 760 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 HNRNPA0Q13151 305 aaKnown RBP1.25□□□□□ -2.21
LINC00643-201ENST00000334389 BIRC2Q13490 618 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 MSMO1Q15800 293 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 TTLL9Q3SXZ7 439 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 OR5M10Q6IEU7 315 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 DENND1BQ6P3S1 775 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 SASS6Q6UVJ0 657 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 TSPAN33Q86UF1 283 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 CALHM3Q86XJ0 350 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 CNGA4Q8IV77 575 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 PELI3Q8N2H9 469 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 Q8N402 240 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 LINC00311Q8N616 119 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 DRAM1Q8N682 238 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 SIGLECL1Q8N7X8 197 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 BANPQ8N9N5 519 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 OR1J4Q8NGS1 313 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 ST7LQ8TDW4 575 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 RAB40AQ8WXH6 277 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 ATG4AQ8WYN0 398 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 LZICQ8WZA0 190 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 TFGQ92734 400 aaPredicted RBP1.25□□□□□ -2.21
LINC00643-201ENST00000334389 ITCHQ96J02 903 aa1.25□□□□□ -2.21
LINC00643-201ENST00000334389 PLEKHA8Q96JA3 519 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms