RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SULF2Q8IWU5 870 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 KLHDC8BQ8IXV7 354 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 DNAJC22Q8N4W6 341 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 OR2C3Q8N628 320 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 ZFP41Q8N8Y5 198 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 SIDT2Q8NBJ9 832 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 ANKRD9Q96BM1 317 aaPredicted RBP7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 TBC1D20Q96BZ9 403 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 TMEM169Q96HH4 297 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 SOX7Q9BT81 388 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 AMBRA1Q9C0C7 1298 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 HSD3B7Q9H2F3 369 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 AGO4Q9HCK5 861 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 LAMP3Q9UQV4 416 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 ENPP4Q9Y6X5 453 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 TMEM238LA0A1B0GVL6 79 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 A6NJY4 79 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 ZNF716A6NP11 495 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 ACOT7O00154 380 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 FAAHO00519 579 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 WDR1O75083 606 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 MT-CO3P00414 261 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 OPN1SWP03999 348 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 HMGN1P05114 100 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 HEXAP06865 529 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 RGRP47804 291 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 NMUP48645 174 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 MTPNP58546 118 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 BAATQ14032 418 aaPredicted RBP7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 TMEM126BQ8IUX1 230 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 LGI4Q8N135 537 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 MS4A10Q96PG2 267 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 TAAR9Q96RI9 348 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 HAPLN3Q96S86 360 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 TMEM106CQ9BVX2 250 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 GORASP2Q9H8Y8 452 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 CA10Q9NS85 328 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 FGF21Q9NSA1 209 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 B3GNT3Q9Y2A9 372 aa7.19□□□□□ -1.26
LIMCH1-201ENST00000313860 PLCH2O75038 1416 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 TRAV8-7A0A075B6U6 113 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 FAM234BA2RU67 622 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 CSN3P07498 182 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 HOXB8P17481 243 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 MPSTP25325 297 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 HMGCS2P54868 508 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 PMP22Q01453 160 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 TMEM119Q4V9L6 283 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 TMEM128Q5BJH2 165 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 ARL13AQ5H913 290 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 NHLRC1Q6VVB1 395 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 RABEPKQ7Z6M1 372 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 STXBP6Q8NFX7 210 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 CMBLQ96DG6 245 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 OR5M11Q96RB7 305 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 RAB1BQ9H0U4 201 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 TMPRSS4Q9NRS4 437 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 DNAJB11Q9UBS4 358 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 TIMM22Q9Y584 194 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 MYO3AQ8NEV4 1616 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 KNDC1Q76NI1 1749 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 A6NL46 340 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 CDRT15L2A8MXV6 281 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 SMLR1H3BR10 107 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 VAMP5O95183 116 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 C6orf47O95873 294 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 UBL4AP11441 157 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 GABRB1P18505 474 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 MMP11P24347 488 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 KLRC1P26715 233 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 VIPR1P32241 457 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 EIF1P41567 113 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 HCAR3P49019 387 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 NCBP2P52298 156 aaKnown RBP eCLIP7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 SLAMF1Q13291 335 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 GAB1Q13480 694 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 OR4C11Q6IEV9 310 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 TMEM88Q6PEY1 159 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 SBSNQ6UWP8 590 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 SLC16A14Q7RTX9 510 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 MDGA2Q7Z553 956 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 C17orf64Q86WR6 236 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 GPR137CQ8N3F9 429 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 AQP11Q8NBQ7 271 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 SLC2A14Q8TDB8 520 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 ST8SIA4Q92187 359 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 PWWP2AQ96N64 755 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 DPH7Q9BTV6 452 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 CRTAC1Q9NQ79 661 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 NEURL4Q96JN8 1562 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 NRCAMQ92823 1304 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 TNRQ92752 1358 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 LOC100130705A0A1B0GUX0 176 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 AQP12BA6NM10 295 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 M0R135 149 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 UPK1AO00322 258 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 USP17L8P0C7I0 530 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 ATXN1LP0C7T5 689 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 ADORA3P0DMS8 318 aa7.18□□□□□ -1.26
LIMCH1-201ENST00000313860 FAHP16930 419 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms