RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 HPNP05981 417 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 SHC1P29353 583 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 SFTPDP35247 375 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 SLC6A8P48029 635 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 B3GALT5-AS1P59052 145 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 KCNC4Q03721 635 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 CHRNB3Q05901 458 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 C19orf57Q0VDD7 668 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 HYAL4Q2M3T9 481 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 TRILQ7L0X0 811 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 ZNF440Q8IYI8 595 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 FAR1Q8WVX9 515 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 C3orf49Q96BT1 292 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 UGT2B28Q9BY64 529 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 OR11A1Q9GZK7 315 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 TMEM27Q9HBJ8 222 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 SPRR3Q9UBC9 169 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 OSGIN1Q9UJX0 560 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 A4GNTQ9UNA3 340 aa16.42■□□□□ 0.22
HMGA1-201ENST00000311487 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 FAM47E-STBD1D6RA91 191 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 DLGAP1O14490 977 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 SLC1A3P43003 542 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 IQCCQ4KMZ1 466 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 ALG10BQ5I7T1 473 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 WBP2NLQ6ICG8 309 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 WDR88Q6ZMY6 472 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 MEX3DQ86XN8 651 aaKnown RBP16.41■□□□□ 0.22
HMGA1-201ENST00000311487 PHF10Q8WUB8 498 aaKnown RBP16.41■□□□□ 0.22
HMGA1-201ENST00000311487 WBP1Q96G27 269 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 ZNF559Q9BR84 538 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 IL1RAPQ9NPH3 570 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 TESQ9UGI8 421 aaKnown RBP16.41■□□□□ 0.22
HMGA1-201ENST00000311487 U3KQV3 271 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 TRGV5A0A0B4J1U4 118 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 NPIPA2E9PIF3 369 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 NPIPA3F8WFD2 350 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 KPNA4O00629 521 aaPredicted RBP16.41■□□□□ 0.22
HMGA1-201ENST00000311487 CLOCKO15516 846 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 SEC14L5O43304 696 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 CRYABP02511 175 aaKnown RBP16.41■□□□□ 0.22
HMGA1-201ENST00000311487 SUMO3P55854 103 aaPredicted RBP16.41■□□□□ 0.22
HMGA1-201ENST00000311487 NHSL2Q5HYW2 709 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 GDF7Q7Z4P5 450 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 ADGRG3Q86Y34 549 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 NKAIN4Q8IVV8 208 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 CPT1CQ8TCG5 803 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 ZNF300Q96RE9 604 aaPredicted RBP16.41■□□□□ 0.22
HMGA1-201ENST00000311487 NTN4Q9HB63 628 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 C8orf4Q9NR00 106 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 ALKBH4Q9NXW9 302 aa16.41■□□□□ 0.22
HMGA1-201ENST00000311487 ZC3H12DA2A288 527 aaKnown RBP16.4■□□□□ 0.22
HMGA1-201ENST00000311487 PRSS23O95084 383 aa16.4■□□□□ 0.22
HMGA1-201ENST00000311487 CLDN20P56880 219 aa16.4■□□□□ 0.22
HMGA1-201ENST00000311487 MYBPC1Q00872 1141 aa16.4■□□□□ 0.22
HMGA1-201ENST00000311487 LAPTM4AQ15012 233 aa16.4■□□□□ 0.22
HMGA1-201ENST00000311487 ZSWIM7Q19AV6 140 aa16.4■□□□□ 0.22
HMGA1-201ENST00000311487 C1QL3Q5VWW1 255 aa16.4■□□□□ 0.22
HMGA1-201ENST00000311487 OR5M9Q8NGP3 310 aa16.4■□□□□ 0.22
HMGA1-201ENST00000311487 NR4A3Q92570 626 aa16.4■□□□□ 0.22
HMGA1-201ENST00000311487 SLC41A3Q96GZ6 507 aa16.4■□□□□ 0.22
HMGA1-201ENST00000311487 BDH2Q9BUT1 245 aa16.4■□□□□ 0.22
HMGA1-201ENST00000311487 OR2B2Q9GZK3 357 aa16.4■□□□□ 0.22
HMGA1-201ENST00000311487 ACER3Q9NUN7 267 aa16.4■□□□□ 0.22
HMGA1-201ENST00000311487 FAM32AQ9Y421 112 aaKnown RBP16.4■□□□□ 0.22
HMGA1-201ENST00000311487 ENPP4Q9Y6X5 453 aa16.4■□□□□ 0.22
HMGA1-201ENST00000311487 TMED7-TICAM2A0A0A6YYA0 188 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 A0A0B4J2E0 115 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 A0A1B0GX12 115 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 TMEM72A0PK05 275 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 BMP7P18075 431 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 IST1P53990 364 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 GFRA1P56159 465 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 TBPL2Q6SJ96 375 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 PRICKLE2Q7Z3G6 844 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 GRINAQ7Z429 371 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 LSMEM1Q8N8F7 131 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 TMEM255BQ8WV15 326 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 TMEM234Q8WY98 164 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 ZBTB8AQ96BR9 441 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 PIGQQ9BRB3 760 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 FNDC11Q9BVV2 318 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 TRIM2Q9C040 744 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 ADAM19Q9H013 955 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 TMED7Q9Y3B3 224 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 A0A1W2PNR3 127 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 EI24O14681 340 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 DEAF1O75398 565 aaPredicted RBP16.39■□□□□ 0.21
HMGA1-201ENST00000311487 CXCR1P25024 350 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 RRM2P31350 389 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 SUCLG1P53597 346 aaKnown RBP16.39■□□□□ 0.21
HMGA1-201ENST00000311487 SPIBQ01892 262 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 TMEM176BQ3YBM2 270 aaPredicted RBP16.39■□□□□ 0.21
HMGA1-201ENST00000311487 ZNF324BQ6AW86 544 aaPredicted RBP16.39■□□□□ 0.21
HMGA1-201ENST00000311487 GTPBP8Q8N3Z3 284 aaPredicted RBP16.39■□□□□ 0.21
HMGA1-201ENST00000311487 NEIL3Q8TAT5 605 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 ST8SIA1Q92185 356 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 NMNAT1Q9HAN9 279 aaPredicted RBP16.39■□□□□ 0.21
HMGA1-201ENST00000311487 ACKR4Q9NPB9 350 aa16.39■□□□□ 0.21
HMGA1-201ENST00000311487 VNN3Q9NY84 501 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms