RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 C6orf47O95873 294 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 IGHV3-9P01782 118 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 FAM153BP0C7A2 387 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 PRPS1L1P21108 318 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 SPOCK1Q08629 439 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 SQLEQ14534 574 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 GPR68Q15743 365 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 GABRA6Q16445 453 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 FAM153CQ494X1 144 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 ATP6AP1LQ52LC2 224 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 LIPNQ5VXI9 398 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 B3GLCTQ6Y288 498 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 TWIST2Q8WVJ9 160 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 ZNF524Q96C55 264 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 COQ8BQ96D53 544 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 PIMREGQ9BSJ6 248 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 GATA5Q9BWX5 397 aaPredicted RBP12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 BHLHE41Q9C0J9 482 aaPredicted RBP12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 MYOZ1Q9NP98 299 aaPredicted RBP12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 EXD2Q9NVH0 621 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 TRAPPC4Q9Y296 219 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 SLC35A3Q9Y2D2 325 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 TRAF6Q9Y4K3 522 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 LOC100289279A0A1B0GTE1 492 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 EIF1BO60739 113 aaKnown RBP12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 AGR2O95994 175 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 WNT11O96014 354 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 GUSBP08236 651 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 UBTFL6P0CB48 400 aaPredicted RBP12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 PAX7P23759 505 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 PHC1P78364 1004 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 ARHGAP11BQ3KRB8 267 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 C16orf62Q7Z3J2 963 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 C10orf107Q8IVU9 208 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 ZNF540Q8NDQ6 660 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 ZNF563Q8TA94 476 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 HTRA1Q92743 480 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 CCDC106Q9BWC9 280 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 C12orf65Q9H3J6 166 aaKnown RBP12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 POLE3Q9NRF9 147 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 UPB1Q9UBR1 384 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 SLC9A8Q9Y2E8 581 aa12.96□□□□□ -0.33
CCDC88B-201ENST00000301897 VWC2LB2RUY7 222 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 PDLIM1O00151 329 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 PIP5K1BO14986 540 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 NPHS1O60500 1241 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 ITGA5P08648 1049 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 MATN1P21941 496 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 IGFBP5P24593 272 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 SOAT1P35610 550 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 HTR3AP46098 478 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 PTGR1Q14914 329 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 PCLAFQ15004 111 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 UGT3A2Q3SY77 523 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 FAM120AOSQ5T036 256 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 ATAD3BQ5T9A4 648 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 KLHL24Q6TFL4 600 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 CASP12Q6UXS9 341 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 GRINAQ7Z429 371 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 FAM71CQ8NEG0 241 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 OR5D16Q8NGK9 328 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 OR5AK3PQ8NH89 298 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 PMM1Q92871 262 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 DUSP26Q9BV47 211 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 ZNF350Q9GZX5 532 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 SLC17A5Q9NRA2 495 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 CTPS2Q9NRF8 586 aa12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 FBXO9Q9UK97 447 aaPredicted RBP12.95□□□□□ -0.34
CCDC88B-201ENST00000301897 LOC390937A0A1W2PQ73 354 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 A0A1W2PR80 420 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 KIAA0513O60268 411 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 PEX11AO75192 247 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 UGT2B17O75795 530 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 APEHP13798 732 aaKnown RBP12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 KRT4P19013 534 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 NR4A2P43354 598 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 MAP2K6P52564 334 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 PRPS1P60891 318 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 SNRPD2P62316 118 aaKnown RBP12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 HBA1P69905 142 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 SLC35A1P78382 337 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 MAD2L1Q13257 205 aaPredicted RBP12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 GGTLC2Q14390 218 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 XKR7Q5GH72 579 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 AP1ARQ63HQ0 302 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 C6orf120Q7Z4R8 191 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 ABHD12BQ7Z5M8 362 aaPredicted RBP12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 WDR31Q8NA23 367 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 FNDC5Q8NAU1 212 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 MIPOL1Q8TD10 442 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 MSI2Q96DH6 328 aaKnown RBP12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 SLC35G5Q96KT7 338 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 NAA11Q9BSU3 229 aaPredicted RBP12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 C1QTNF6Q9BXI9 259 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 CHODLQ9H9P2 273 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 OBP2BQ9NPH6 170 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 EXOSC3Q9NQT5 275 aaKnown RBP12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 TMEM181Q9P2C4 612 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 KCNE5Q9UJ90 142 aa12.94□□□□□ -0.34
CCDC88B-201ENST00000301897 MKLN1Q9UL63 735 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms