RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 HLA-DOBP13765 273 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 DRD2P14416 443 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 GABRB3P28472 473 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 NDUFA6P56556 154 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 LDLRAD1Q5T700 205 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 C14orf79Q96F83 325 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 OR11A1Q9GZK7 315 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 TMEM235A6NFC5 223 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 RBMS2Q15434 407 aaKnown RBP9.25□□□□□ -0.93
COL6A3-201ENST00000295550 C18orf63Q68DL7 685 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 OTOP2Q7RTS6 562 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 PXT1Q8NFP0 134 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 ARRDC2Q8TBH0 407 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 PRTFDC1Q9NRG1 225 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 KCNIP2Q9NS61 270 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 TDRD15B5MCY1 1934 aaKnown RBP9.25□□□□□ -0.93
COL6A3-201ENST00000295550 ACOT8O14734 319 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 ITGB2P05107 769 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 TNK1Q13470 666 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 BRICD5Q6PL45 260 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 COMMD6Q7Z4G1 85 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 FIBINQ8TAL6 211 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 THAP3Q8WTV1 239 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-201ENST00000295550 IRF7Q92985 503 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 PELI2Q9HAT8 420 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 MYADML2A6NDP7 307 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 RAD1O60671 282 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 PDLIM3Q53GG5 364 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-201ENST00000295550 HACD4Q5VWC8 232 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 LCN10Q6JVE6 187 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 RNF111Q6ZNA4 994 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 ZNF454Q8N9F8 522 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 TM9SF4Q92544 642 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 ZDHHC12Q96GR4 267 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 SAMD8Q96LT4 415 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 NT5DC2Q9H857 520 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 OLAHQ9NV23 265 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 C7orf72A4D263 438 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 RNF212BA8MTL3 300 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 RFXAPO00287 272 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 SYN1P17600 705 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 SLC14A1Q13336 389 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 UNC5DQ6UXZ4 953 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 ZNF704Q6ZNC4 412 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-201ENST00000295550 Q6ZVL8 140 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 MCOLN1Q9GZU1 580 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 RASD1Q9Y272 281 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 DCDC2BA2VCK2 349 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 VEGFDO43915 354 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 DUSP7Q16829 419 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 OR13F1Q8NGS4 319 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 OR4K15Q8NH41 348 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 RSPRY1Q96DX4 576 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 RNF32Q9H0A6 362 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 TLR9Q9NR96 1032 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 NCOR1O75376 2440 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 A0A087WUU8 490 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 LILRB3O75022 631 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 SYPP08247 313 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 ZNF26P17031 533 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-201ENST00000295550 CD53P19397 219 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 OMGP23515 440 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 TBCEQ15813 527 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-201ENST00000295550 KCNJ8Q15842 424 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 OR52W1Q6IF63 320 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 ZNF574Q6ZN55 896 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-201ENST00000295550 OR52H1Q8NGJ2 320 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 IL17CQ9P0M4 197 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 LOC102723532A0A0G2JNH3 316 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 SMIM18P0DKX4 95 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 BCKDHBP21953 392 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 PIANPQ8IYJ0 282 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 CWH43Q9H720 699 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 NRXN2Q9P2S2 1712 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 SMLR1H3BR10 107 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 TNFRSF10AO00220 468 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 CACNG3O60359 315 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 ELK1P19419 428 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 TAS2R38P59533 333 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 HBG1P69891 147 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 HBG2P69892 147 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 MFGE8Q08431 387 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-201ENST00000295550 OR9A4Q8NGU2 314 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 CAPNS2Q96L46 248 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 KCNK6Q9Y257 313 aa9.25□□□□□ -0.93
COL6A3-201ENST00000295550 GJE1A6NN92 205 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 SOCS7O14512 581 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 OSMP13725 252 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 SDC1P18827 310 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 NFYAP23511 347 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 NUDT1P36639 197 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 CASP3P42574 277 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 CLVS2Q5SYC1 327 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 SLC43A2Q8N370 569 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 FAM213BQ8TBF2 198 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 NICN1Q9BSH3 213 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 NIPAL2Q9H841 368 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 ZNF230Q9UIE0 474 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-201ENST00000295550 DOCK6Q96HP0 2047 aa9.24□□□□□ -0.93
COL6A3-201ENST00000295550 RPS15AP62244 130 aaKnown RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms