RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 IL20RBQ6UXL0 311 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 ZNF550Q7Z398 422 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 Q8N9G6 341 aaPredicted RBP18.43■□□□□ 0.54
VPS53-201ENST00000291074 FAM98AQ8NCA5 519 aaKnown RBP18.43■□□□□ 0.54
VPS53-201ENST00000291074 OR6C4Q8NGE1 309 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 HOXD1Q9GZZ0 328 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 SDC3O75056 442 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 GAAP10253 952 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 EVX1P49640 407 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 ELOCQ15369 112 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 DEFB133Q30KQ1 61 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 ARHGAP11AQ6P4F7 1023 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 Q8N402 240 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 ZNF321PQ8N8H1 164 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 OR13C5Q8NGS8 318 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 TP53INP1Q96A56 240 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 KIAA1143Q96AT1 154 aaPredicted RBP18.43■□□□□ 0.54
VPS53-201ENST00000291074 SMAD5Q99717 465 aaKnown RBP18.43■□□□□ 0.54
VPS53-201ENST00000291074 SOSTQ9BQB4 213 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 CCDC86Q9H6F5 360 aaKnown RBP18.43■□□□□ 0.54
VPS53-201ENST00000291074 ERVMER34-1Q9H9K5 563 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 LMAN1LQ9HAT1 526 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 CHRNA9Q9UGM1 479 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 CA14Q9ULX7 337 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 IER3IP1Q9Y5U9 82 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 SERINC4A6NH21 518 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 CLPSP04118 112 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 NME1P15531 152 aaKnown RBP18.42■□□□□ 0.54
VPS53-201ENST00000291074 SKP1P63208 163 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 COL19A1Q14993 1142 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 ZNF615Q8N8J6 731 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 DTX3Q8N9I9 347 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 G6PC3Q9BUM1 346 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 KCNN2Q9H2S1 579 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 EML5Q05BV3 1969 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 TFP02787 698 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 SLC2A2P11168 524 aaPredicted RBP18.42■□□□□ 0.54
VPS53-201ENST00000291074 OR10A3P58181 314 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 FUT7Q11130 342 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 ZNF544Q6NX49 715 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 VASH1Q7L8A9 365 aaPredicted RBP18.42■□□□□ 0.54
VPS53-201ENST00000291074 GLCCI1Q86VQ1 547 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 ZNRF4Q8WWF5 429 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 SGTBQ96EQ0 304 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 PLCL2Q9UPR0 1127 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 BAIAP2Q9UQB8 552 aa18.42■□□□□ 0.54
VPS53-201ENST00000291074 MEIOCA2RUB1 952 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 CD38P28907 300 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 PYCR1P32322 319 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 NAA10P41227 235 aaPredicted RBP18.41■□□□□ 0.54
VPS53-201ENST00000291074 TP53I3Q53FA7 332 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 OR6F1Q8NGZ6 308 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 MKKSQ9NPJ1 570 aaPredicted RBP18.41■□□□□ 0.54
VPS53-201ENST00000291074 INPP5EQ9NRR6 644 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 SEC14L5O43304 696 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 OIP5O43482 229 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 SOX30O94993 753 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 NDUFB2O95178 105 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 IFNGP01579 166 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 ELK1P19419 428 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 KIR2DL3P43628 341 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 MTNR1BP49286 362 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 ZSCAN1Q8NBB4 408 aa18.41■□□□□ 0.54
VPS53-201ENST00000291074 AHCYL2Q96HN2 611 aaKnown RBP18.41■□□□□ 0.54
VPS53-201ENST00000291074 A0A1W2PR77 199 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 A8MUA0 341 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 B4DXG7 233 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 ZNF749O43361 778 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 GUSBP08236 651 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 GALP22466 123 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 CD1CP29017 333 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 CEACAM19Q7Z692 300 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 ZPLD1Q8TCW7 415 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 PGLYRP3Q96LB9 341 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 ZNF285Q96NJ3 590 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 EVA1AQ9H8M9 152 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 SERTAD3Q9UJW9 196 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 C17orf105B2RV13 164 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 FAM25AB3EWG3 89 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 FAM25CB3EWG5 89 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 FAM25GB3EWG6 89 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 PLPP2O43688 288 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 RPL4P36578 427 aaKnown RBP18.4■□□□□ 0.54
VPS53-201ENST00000291074 ATAD3CQ5T2N8 411 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 LCN1P1Q5VSP4 162 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 TRIQKQ629K1 86 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 MZT2AQ6P582 158 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 GKN2Q86XP6 184 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.4■□□□□ 0.54
VPS53-201ENST00000291074 DEPDC7Q96QD5 511 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 KLHL1Q9NR64 748 aa18.4■□□□□ 0.54
VPS53-201ENST00000291074 A0A087WUJ7 227 aa18.39■□□□□ 0.54
VPS53-201ENST00000291074 A0A0B4J293 547 aa18.39■□□□□ 0.54
VPS53-201ENST00000291074 A0A1W2PRG6 482 aa18.39■□□□□ 0.54
VPS53-201ENST00000291074 SERPINI2O75830 405 aa18.39■□□□□ 0.54
VPS53-201ENST00000291074 GPR143P51810 404 aa18.39■□□□□ 0.54
VPS53-201ENST00000291074 CD226Q15762 336 aa18.39■□□□□ 0.54
VPS53-201ENST00000291074 ABHD4Q8TB40 342 aa18.39■□□□□ 0.54
VPS53-201ENST00000291074 C3orf49Q96BT1 292 aa18.39■□□□□ 0.54
VPS53-201ENST00000291074 RNF31Q96EP0 1072 aa18.39■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms