RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 MS4A13Q5J8X5 152 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 OVCH1Q7RTY7 1134 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 NLGN4YQ8NFZ3 816 aaPredicted RBP13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 SCAMP5Q8TAC9 235 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 FOXJ1Q92949 421 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 PIGQQ9BRB3 760 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 OR51B6Q9H340 312 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 CHD1O14646 1710 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 POU3F2P20265 443 aaPredicted RBP13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 HLA-DMAP28067 261 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 HNRNPA3P51991 378 aaKnown RBP13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 GDF10P55107 478 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 ARHGAP11BQ3KRB8 267 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 EBF1Q9UH73 591 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 PTPRMP28827 1452 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 XRCC3O43542 346 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 FAM163BP0C2L3 166 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 AGFG1P52594 562 aaKnown RBP13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 FBXL22Q6P050 247 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 DHRS11Q6UWP2 260 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 KIAA1456Q9P272 454 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 GPR52Q9Y2T5 361 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 HPGDSO60760 199 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 MBP02144 154 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 DACT2Q5SW24 774 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 CDHR3Q6ZTQ4 885 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 SUSD3Q96L08 255 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 OR7D2Q96RA2 312 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 KIAA1324LA8MWY0 1029 aaPredicted RBP13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 BIDP55957 195 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 PIGCQ92535 297 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 BOCQ9BWV1 1114 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 OMGP23515 440 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 SCN8AQ9UQD0 1980 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 BET1O15155 118 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 ACKR3P25106 362 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 LMO2P25791 158 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 RABIFP47224 123 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 ZNF133P52736 654 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 TAS2R45P59539 299 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 PLAG1Q6DJT9 500 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 IGFN1Q86VF2 1251 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 CDS1Q92903 461 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 ANKUB1A6NFN9 424 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 DDAH2O95865 285 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 SYN1P17600 705 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 HLA-FP30511 346 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 LCN6P62502 163 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 STEAP1BQ6NZ63 245 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 CLEC20AQ6ZU45 233 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 CPEB3Q8NE35 698 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 OLAHQ9NV23 265 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 TMEM88BA6NKF7 163 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 EMP2P54851 167 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 LTB4RQ15722 352 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 MOB3CQ70IA8 216 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 PGBD5Q8N414 524 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 BPIFB2Q8N4F0 458 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 SLC15A4Q8N697 577 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 UCN3Q969E3 161 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 MBOAT4Q96T53 435 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 FEVQ99581 238 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 SORBS2O94875 1100 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 CNR2P34972 360 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 H3F3AP84243 136 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 TAGLNQ01995 201 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 ZNF33BQ06732 778 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 TIGITQ495A1 244 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 SYT6Q5T7P8 510 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 NRMQ8IXM6 262 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 SPATA6Q9NWH7 488 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 OR5K3A6NET4 321 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 TATDN3Q17R31 274 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 TMEM104Q8NE00 496 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 C14orf79Q96F83 325 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 SERINC2Q96SA4 455 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 TCRBV21S2A2A0A5A6 115 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 MAN2B1O00754 1011 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 GSRP00390 522 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 FXNQ16595 210 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 SCLYQ96I15 445 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 THSD1Q9NS62 852 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 MEIS3P1A6NDR6 274 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 M6PRP20645 277 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 PIGFQ07326 219 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 HES1Q14469 280 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 OR8B8Q15620 311 aa13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 TMEM184BQ9Y519 407 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-201ENST00000263630 TMEM212A6NML5 194 aa13.08□□□□□ -0.31
CCDC88A-201ENST00000263630 AP1G1O43747 822 aa13.08□□□□□ -0.31
CCDC88A-201ENST00000263630 DGKZQ13574 1117 aa13.08□□□□□ -0.31
CCDC88A-201ENST00000263630 ZNF648Q5T619 568 aaPredicted RBP13.08□□□□□ -0.31
CCDC88A-201ENST00000263630 CPXM2Q8N436 756 aa13.08□□□□□ -0.31
CCDC88A-201ENST00000263630 PEX11GQ96HA9 241 aa13.08□□□□□ -0.31
CCDC88A-201ENST00000263630 C10orf90Q96M02 699 aa13.08□□□□□ -0.31
CCDC88A-201ENST00000263630 GPR62Q9BZJ7 368 aa13.08□□□□□ -0.31
CCDC88A-201ENST00000263630 LHPPQ9H008 270 aa13.08□□□□□ -0.31
CCDC88A-201ENST00000263630 CACFD1Q9UGQ2 172 aa13.08□□□□□ -0.31
CCDC88A-201ENST00000263630 TMEM235A6NFC5 223 aa13.08□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC41A2Q96JW4 573 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms