RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, human

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00339-213	ENST00000642137	FCGR1A	P12314	374 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	CXCR1	P25024	350 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	B3GALT5-AS1	P59052	145 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	MERTK	Q12866	999 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	FOXF1	Q12946	379 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	TRAM2	Q15035	370 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	CMPK2	Q5EBM0	449 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	NHSL2	Q5HYW2	709 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	ZNF324B	Q6AW86	544 aa	Predicted RBP	11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	OR2T5	Q6IEZ7	315 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	ATG4D	Q86TL0	474 aa	Predicted RBP	11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	OFCC1	Q8IZS5	231 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	CISD2	Q8N5K1	135 aa	Known RBP	11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	OR2T29	Q8NH02	315 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	NEIL3	Q8TAT5	605 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	FAR1	Q8WVX9	515 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	PYDC1	Q8WXC3	89 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	DHRS1	Q96LJ7	313 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	HS6ST2	Q96MM7	605 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	NPAS1	Q99742	590 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	PRSS27	Q9BQR3	290 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	ANKRD19P	Q9H560	264 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	LDAH	Q9H6V9	325 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	NMNAT1	Q9HAN9	279 aa	Predicted RBP	11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	LUZP4	Q9P127	313 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	STOML1	Q9UBI4	398 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	SLC7A7	Q9UM01	511 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	MGA	Q8IWI9	3026 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	TMED7-TICAM2	A0A0A6YYA0	188 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	TRGV5	A0A0B4J1U4	118 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137		A0A1W2PRQ8	180 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	OR2M5	A3KFT3	312 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	ELOA3D	A6NLF2	546 aa	Predicted RBP	11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	NPIPA5	E9PKD4	350 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137		H3BNX3	289 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	ADAMDEC1	O15204	470 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	CLOCK	O15516	846 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	ZNF208	O43345	1280 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	TIPRL	O75663	272 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	GADD45G	O95257	159 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	ACTL6A	O96019	429 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	MT-ND1	P03886	318 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	H1F0	P07305	194 aa	Known RBP	11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	CELA3A	P09093	270 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	FAS	P25445	335 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	ELK4	P28324	431 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	GCK	P35557	465 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	CLK1	P49759	484 aa	Known RBP	11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	GFRA1	P56159	465 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	RAC1	P63000	192 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	FOXK1	P85037	733 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	DGCR6	Q14129	220 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	GK3P	Q14409	553 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	ELOA3B	Q3SY89	546 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	COLEC12	Q5KU26	742 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	RAET1L	Q5VY80	246 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	TRIL	Q7L0X0	811 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	NKAIN4	Q8IVV8	208 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	RNF113B	Q8IZP6	322 aa	Known RBP	11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	ELOA3	Q8NG57	546 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	STMN2	Q93045	179 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	SNRNP40	Q96DI7	357 aa	Known RBP	11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	SFXN2	Q96NB2	322 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	BARD1	Q99728	777 aa	Known RBP	11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	PLSCR2	Q9NRY7	297 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	AGPAT4	Q9NRZ5	378 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	RHCG	Q9UBD6	479 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	DNAJB9	Q9UBS3	223 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	NPIPA1	Q9UND3	350 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	TMED7	Q9Y3B3	224 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	ZNF337	Q9Y3M9	751 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	SPIN1	Q9Y657	262 aa	Predicted RBP	11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	AP4B1	Q9Y6B7	739 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	CACNA1B	Q00975	2339 aa		11.13	□□□□□ -0.63
LINC00339-213	ENST00000642137	TMEM72	A0PK05	275 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137		A8MVM7	634 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	SHISA8	B8ZZ34	492 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137		H0YHG0	523 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	GNGT2	O14610	69 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	DEAF1	O75398	565 aa	Predicted RBP	11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	WISP1	O95388	367 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	PEPD	P12955	493 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	BMP7	P18075	431 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	RRM2	P31350	389 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	RBM34	P42696	430 aa	Known RBP	11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	SPIB	Q01892	262 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	SELENBP1	Q13228	472 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	ATP6AP1	Q15904	470 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	BCL2A1	Q16548	175 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	VASN	Q6EMK4	673 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	TTC33	Q6PID6	262 aa	Predicted RBP	11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	OR5M1	Q8NGP8	315 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	RNF217	Q8TC41	542 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	STK35	Q8TDR2	534 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	SLC25A43	Q8WUT9	341 aa	Predicted RBP	11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	LRTOMT	Q8WZ04	291 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	ABTB1	Q969K4	478 aa	Predicted RBP	11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	GPR137	Q96N19	417 aa		11.12	□□□□□ -0.63
LINC00339-213	ENST00000642137	TMEM43	Q9BTV4	400 aa		11.12	□□□□□ -0.63

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