RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 RHOJQ9H4E5 214 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 RPP21Q9H633 154 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 ZNF430Q9H8G1 570 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 ECT2Q9H8V3 914 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ACTR8Q9H981 624 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 MEAF6Q9HAF1 191 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ROPN1Q9HAT0 212 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 LPAR2Q9HBW0 351 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 EML4Q9HC35 981 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 SYTL2Q9HCH5 934 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 LHX9Q9NQ69 397 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ANO10Q9NW15 660 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 C1orf123Q9NWV4 160 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 SOHLH2Q9NX45 425 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 MRPL39Q9NYK5 338 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 CNOT2Q9NZN8 540 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 SPASTQ9UBP0 616 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 KCNN3Q9UGI6 736 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 FETUBQ9UGM5 382 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 WARS2Q9UGM6 360 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 BCAP29Q9UHQ4 241 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 KIF25Q9UIL4 384 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 CRLS1Q9UJA2 301 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ZNF223Q9UK11 482 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 SMC3Q9UQE7 1217 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ERVW-1Q9UQF0 538 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 RASD1Q9Y272 281 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ZNF835Q9Y2P0 537 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 TDRKHQ9Y2W6 561 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 IFT52Q9Y366 437 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 OARD1Q9Y530 152 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 YTHDF2Q9Y5A9 579 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 AP4B1Q9Y6B7 739 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 PIKFYVEQ9Y2I7 2098 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 PCM1Q15154 2024 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 SDK2Q58EX2 2172 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ABCC4O15439 1325 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 LRP4O75096 1905 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 RLFQ13129 1914 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CABIN1Q9Y6J0 2220 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 GPR179Q6PRD1 2367 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 PPIAL4EA0A075B759 164 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 PPIAL4CA0A0B4J2A2 164 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 A0A0G2JN53 185 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 A0A0U1RQS6 177 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 A0A1B0GVX0 72 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 TMEM150BA6NC51 233 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ARHGAP42A6NI28 874 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 FAM74A7A6NL05 159 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ANKRD30BLA7E2S9 258 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 A8MUU9 505 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 SERPINE3A8MV23 424 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 VGLL3A8MV65 326 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 HMGB1P1B2RPK0 211 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 PPIAL4DF5H284 164 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 F8WDY8 70 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 G3V4G9 280 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 DDX39AO00148 427 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 SULT2B1O00204 365 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 FCN1O00602 326 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CASKO14936 926 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 MSH4O15457 936 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 MBTPS2O43462 519 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ZNF207O43670 478 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 PRKYO43930 277 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 B4GALT2O60909 372 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 SUPT3HO75486 399 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 TNFSF13O75888 250 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 KIAA0754O94854 1291 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 UFL1O94874 794 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 SNAPINO95295 136 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 TRIM16O95361 564 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ADCY5O95622 1261 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 STAMBPO95630 424 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 GNA14O95837 355 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 IGLV3-19P01714 112 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 PCCBP05166 539 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CENPBP07199 599 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 CA3P07451 260 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 HSP90AB1P08238 724 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 MRPL3P09001 348 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 CISD3P0C7P0 127 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 RBMY1CP0DJD4 496 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 PPIAL4FP0DN26 164 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 IGHV3-43DP0DP04 118 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 RNASE2P10153 161 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 CLUP10909 449 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 RNH1P13489 461 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 ICAM2P13598 275 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 MUC1P15941 1255 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 H2AFXP16104 143 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 TSPAN8P19075 237 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 PGCP20142 388 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 HNF1AP20823 631 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 SERPINA2P20848 420 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 NT5EP21589 574 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 PAICSP22234 425 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 CXCR2P25025 360 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ATP5A1P25705 553 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 OAS2P29728 719 aaKnown RBP0.17□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms