RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SYT13Q7L8C5 426 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 MRPL10Q7Z7H8 261 aaKnown RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 SLC35F2Q8IXU6 374 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF582Q96NG8 517 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 WACQ9BTA9 647 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 SLC7A8Q9UHI5 535 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 POMPQ9Y244 141 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ANHXE9PGG2 379 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 I6L893 689 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 BEST1O76090 585 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 PRKD3O94806 890 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 CRYAAP02489 173 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 F7P08709 466 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 HMGCLP35914 325 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 CAMLGP49069 296 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 TAS2R46P59540 309 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF616Q08AN1 781 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 GK3PQ14409 553 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 C2orf76Q3KRA6 126 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 OR5AR1Q8NGP9 310 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 OR4K13Q8NH42 304 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 LRFN5Q96NI6 719 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 SLC30A3Q99726 388 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 TUBA1CQ9BQE3 449 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 HES4Q9HCC6 221 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF334Q9HCZ1 680 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 SLC6A20Q9NP91 592 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 KCNIP2Q9NS61 270 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 CDX4O14627 284 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 CASC3O15234 703 aaKnown RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF182P17025 639 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 OR1D4P47884 311 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 EMP3P54852 163 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 MAB21L1Q13394 359 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 SPANXN4Q5MJ08 99 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 TMEM244Q5VVB8 128 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 OR5M10Q6IEU7 315 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 METTL4Q8N3J2 472 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 OR5T1Q8NG75 326 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 NPRL2Q8WTW4 380 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ANKRD9Q96BM1 317 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 DCLRE1CQ96SD1 692 aaKnown RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 NICN1Q9BSH3 213 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 CPNE5Q9HCH3 593 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 INTS6Q9UL03 887 aaKnown RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 MAP1BP46821 2468 aaKnown RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 SLURP2P0DP57 97 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 CAV2P51636 162 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 LRRC37A5PQ49AS3 106 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 RNASE10Q5GAN6 216 aaKnown RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 RAB41Q5JT25 222 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ANKRD22Q5VYY1 191 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 TANGO2Q6ICL3 276 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 B3GLCTQ6Y288 498 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF767PQ75MW2 155 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF367Q7RTV3 350 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 SPARTQ8N0X7 666 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ACBD7Q8N6N7 88 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 CCDC74AQ96AQ1 378 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 C1orf198Q9H425 327 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 BCO1Q9HAY6 547 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 CHST11Q9NPF2 352 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 KCNJ16Q9NPI9 418 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 USP22Q9UPT9 525 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 MED16Q9Y2X0 877 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 PRAMEF4O60810 478 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 HNRNPH3P31942 346 aaKnown RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 RPS5P46782 204 aaKnown RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 RSPO2Q6UXX9 243 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 BEST3Q8N1M1 668 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 PHTF2Q8N3S3 785 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 CHST14Q8NCH0 376 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 OR6T1Q8NGN1 323 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 TMEM40Q8WWA1 233 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 YTHDF1Q9BYJ9 559 aaKnown RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 KCNK12Q9HB15 430 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 RDH14Q9HBH5 336 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ONECUT1Q9UBC0 465 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 SLC2A6Q9UGQ3 507 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ENPP5Q9UJA9 477 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 NDRG4Q9ULP0 352 aaKnown RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 B3GNT3Q9Y2A9 372 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 TVP23AA6NH52 213 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 M0QZQ0 153 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 DVL1O14640 695 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF264O43296 627 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 SSX4O60224 188 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 PRSS56P0CW18 603 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ALDH3B2P48448 385 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 DVL1P1P54792 670 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 RAB38P57729 211 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 CRMP1Q14194 572 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF628Q5EBL2 1059 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF678Q5SXM1 525 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 DCST2Q5T1A1 773 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 TMEM185AQ8NFB2 350 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 OR5K2Q8NHB8 316 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 IGSF8Q969P0 613 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 PKP2Q99959 881 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 GFOD1Q9NXC2 390 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms