RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SIM1P81133 766 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-216ENST00000637968 ISXQ2M1V0 245 aa5.37□□□□□ -1.55
SCN1A-216ENST00000637968 XKR4Q5GH76 650 aa5.37□□□□□ -1.55
SCN1A-216ENST00000637968 DCAF10Q5QP82 559 aa5.37□□□□□ -1.55
SCN1A-216ENST00000637968 NBPF12Q5TAG4 269 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-216ENST00000637968 ACOT7LQ6ZUV0 252 aa5.37□□□□□ -1.55
SCN1A-216ENST00000637968 TMCO2Q7Z6W1 182 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-216ENST00000637968 GABRG1Q8N1C3 465 aa5.37□□□□□ -1.55
SCN1A-216ENST00000637968 CBARPQ8N350 705 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-216ENST00000637968 FRMD1Q8N878 549 aa5.37□□□□□ -1.55
SCN1A-216ENST00000637968 OR4F15Q8NGB8 312 aa5.37□□□□□ -1.55
SCN1A-216ENST00000637968 HSD17B14Q9BPX1 270 aa5.37□□□□□ -1.55
SCN1A-216ENST00000637968 NRIP2Q9BQI9 281 aa5.37□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF302Q9NR11 478 aa5.37□□□□□ -1.55
SCN1A-216ENST00000637968 CBLN4Q9NTU7 201 aa5.37□□□□□ -1.55
SCN1A-216ENST00000637968 CHST2Q9Y4C5 530 aa5.37□□□□□ -1.55
SCN1A-216ENST00000637968 ASB1Q9Y576 335 aa5.37□□□□□ -1.55
SCN1A-216ENST00000637968 PCYT1BQ9Y5K3 369 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-216ENST00000637968 NALCNQ8IZF0 1738 aa5.37□□□□□ -1.55
SCN1A-216ENST00000637968 NWD1Q149M9 1564 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 A0A1B0GV72 72 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 A0A1W2PN81 502 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 C2orf78A6NCI8 922 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 TMEM238C9JI98 176 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 WNT10BO00744 389 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 TP53I11O14683 189 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 EREGO14944 169 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 CYB5BO43169 146 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 GPRIN2O60269 458 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 OR4F21O95013 312 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 IL5P05113 134 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 IL3P08700 152 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 EPHA1P21709 976 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 OR1E1P30953 314 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 CHRNA7P36544 502 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 KLF3P57682 345 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 CHRFAM7AQ494W8 412 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 SPANXN4Q5MJ08 99 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF697Q5TEC3 545 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 OR4F3Q6IEY1 312 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 POGLUT1Q8NBL1 392 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 OR2L2Q8NH16 312 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 SMPDL3AQ92484 453 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 BPIFA2Q96DR5 249 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 AKR1E2Q96JD6 320 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 FCRL5Q96RD9 977 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 C11orf84Q9BUA3 381 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 POLR2J3Q9H1A7 115 aaKnown RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 CYSLTR2Q9NS75 346 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 TMEM184CQ9NVA4 438 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 IL19Q9UHD0 177 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ADAMTS5Q9UNA0 930 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 CAMTA1Q9Y6Y1 1673 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 A0A1W2PPE3 182 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 WTIPA6NIX2 430 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ANHXE9PGG2 379 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 SULT2B1O00204 365 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 GABRPO00591 440 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 MSCO60682 206 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 C22orf31O95567 290 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 CSN2P05814 226 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 AQP2P41181 271 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 AWAT1Q58HT5 328 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ARSIQ5FYB1 569 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 KIAA0319Q5VV43 1072 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 LAIR1Q6GTX8 287 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 FAHD1Q6P587 224 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 NXPE4Q6UWF7 544 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 TMEM108Q6UXF1 575 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 SERPINA13PQ6UXR4 307 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 NPSR1Q6W5P4 371 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 NDUFAF7Q7L592 441 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF687Q8N1G0 1237 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 OR10AD1Q8NGE0 317 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 TRAPPC12Q8WVT3 735 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 SENP5Q96HI0 755 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 FAM117AQ9C073 453 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF226Q9NYT6 803 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 SLC13A4Q9UKG4 626 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 FAM96BQ9Y3D0 163 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 MAP4K5Q9Y4K4 846 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 NPTNQ9Y639 398 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 TIAM2Q8IVF5 1701 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 USP54Q70EL1 1684 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ZCWPW2A0A1B0GU75 182 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 OR52A4PA6NMU1 304 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 CTNSO60931 367 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ITPKAP23677 461 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ALDH3B1P43353 468 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 RFX3P48380 749 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ELAVL1Q15717 326 aaKnown RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 DUOXA1Q1HG43 343 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 DACT2Q5SW24 774 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 SYPL2Q5VXT5 272 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 JMJD6Q6NYC1 403 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 PLBD1Q6P4A8 553 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 Q6ZTK2 550 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 SLC35D2Q76EJ3 337 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 TMED4Q7Z7H5 227 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 APCDD1Q8J025 514 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms