RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 CLOCKO15516 846 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 DNPH1O43598 174 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 SHOX2O60902 331 aaPredicted RBP16.32■□□□□ 0.2
CLN3-241ENST00000635861 COX5AP20674 150 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 IDUAP35475 653 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 APOBEC1P41238 236 aaKnown RBP16.32■□□□□ 0.2
CLN3-241ENST00000635861 SESN3P58005 492 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 SYT14P1Q58G82 188 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 TIMM23BQ5SRD1 257 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 ANXA8L1Q5VT79 327 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 OR4F3Q6IEY1 312 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 SEZ6L2Q6UXD5 910 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 TMPPEQ6ZT21 453 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 GALNT5Q7Z7M9 940 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 FAM71CQ8NEG0 241 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 SMAP2Q8WU79 429 aaPredicted RBP16.32■□□□□ 0.2
CLN3-241ENST00000635861 TESCQ96BS2 214 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 ZBTB9Q96C00 473 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 MUCL1Q96DR8 90 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 FAIMQ9NVQ4 179 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 KCNE5Q9UJ90 142 aa16.32■□□□□ 0.2
CLN3-241ENST00000635861 SONP18583 2426 aaKnown RBP16.32■□□□□ 0.2
CLN3-241ENST00000635861 IGKV3D-15A0A087WSY6 115 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 IGHV3-15A0A0B4J1V0 119 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 PRSS51A0A1B0GVH4 220 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 A0A1W2PP18 115 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 BIRC5O15392 142 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 KIAA0513O60268 411 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 FCMRO60667 390 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 H6PDO95479 791 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 SERPINE1P05121 402 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 UQCRC2P22695 453 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 PCSK6P29122 969 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 CLK1P49759 484 aaKnown RBP16.31■□□□□ 0.2
CLN3-241ENST00000635861 DIO1P49895 249 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 RNF144AP50876 292 aaPredicted RBP16.31■□□□□ 0.2
CLN3-241ENST00000635861 RPS26P62854 115 aaKnown RBP16.31■□□□□ 0.2
CLN3-241ENST00000635861 PPA1Q15181 289 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 TSC22D1Q15714 1073 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 CLEC12BQ2HXU8 276 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 ABLIM2Q6H8Q1 611 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 ALKBH2Q6NS38 261 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 CLECL1Q8IZS7 167 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 OR4A15Q8NGL6 344 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 ZNF524Q96C55 264 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 ZHX1-C8orf76Q96EF9 292 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 RADILQ96JH8 1075 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 DPY30Q9C005 99 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 SAP130Q9H0E3 1048 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 OR51I1Q9H343 314 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 SSU72Q9NP77 194 aaKnown RBP16.31■□□□□ 0.2
CLN3-241ENST00000635861 EXOSC3Q9NQT5 275 aaKnown RBP16.31■□□□□ 0.2
CLN3-241ENST00000635861 MKLN1Q9UL63 735 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 RAP2CQ9Y3L5 183 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 ATRQ13535 2644 aa16.31■□□□□ 0.2
CLN3-241ENST00000635861 GOLGA8QA0A0J9YX86 632 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 GOLGA8OA6NCC3 632 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 GOLGA8NF8WBI6 632 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 SULT2B1O00204 365 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 CYP7B1O75881 506 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 PGM3O95394 542 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 UBTFL6P0CB48 400 aaPredicted RBP16.3■□□□□ 0.2
CLN3-241ENST00000635861 PGM1P36871 562 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 CLNS1AP54105 237 aaKnown RBP16.3■□□□□ 0.2
CLN3-241ENST00000635861 TXNL4AP83876 142 aaKnown RBP16.3■□□□□ 0.2
CLN3-241ENST00000635861 BSPH1Q075Z2 132 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 MERTKQ12866 999 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 TNK1Q13470 666 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 AGBL2Q5U5Z8 902 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 MTDHQ86UE4 582 aaKnown RBP16.3■□□□□ 0.2
CLN3-241ENST00000635861 ZNF100Q8IYN0 542 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 ZNF75CPQ92670 426 aaPredicted RBP16.3■□□□□ 0.2
CLN3-241ENST00000635861 TLCD1Q96CP7 247 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 TRIM2Q9C040 744 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 AKTIPQ9H8T0 292 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 RRP15Q9Y3B9 282 aaKnown RBP16.3■□□□□ 0.2
CLN3-241ENST00000635861 HDGFL3Q9Y3E1 203 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 WDR45Q9Y484 360 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 COL6A5A8TX70 2615 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 RTTNQ86VV8 2226 aa16.3■□□□□ 0.2
CLN3-241ENST00000635861 MXRA5Q9NR99 2828 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 DPRXA6NFQ7 191 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 INAFM1C9JVW0 142 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 EBAG9O00559 213 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 GPR171O14626 319 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 SCN2BO60939 215 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 PMS2P2O95744 297 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 THBS1P07996 1170 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 SOD3P08294 240 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 CREB1P16220 341 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 GGT1P19440 569 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 KHKP50053 298 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 ABCE1P61221 599 aaKnown RBP16.29■□□□□ 0.2
CLN3-241ENST00000635861 VEZF1Q14119 521 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 PDCD2Q16342 344 aaPredicted RBP16.29■□□□□ 0.2
CLN3-241ENST00000635861 SAXO2Q658L1 398 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 TYW3Q6IPR3 259 aaKnown RBP16.29■□□□□ 0.2
CLN3-241ENST00000635861 GRINAQ7Z429 371 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 PRIMA1Q86XR5 153 aa16.29■□□□□ 0.2
CLN3-241ENST00000635861 ZNF619Q8N2I2 560 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms