RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 LSMEM1Q8N8F7 131 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 AKAP1Q92667 903 aaKnown RBP eCLIP11.78□□□□□ -0.52
LINC00540-203ENST00000631321 PEX11GQ96HA9 241 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 TNFRSF13CQ96RJ3 184 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 LMF2Q9BU23 707 aaKnown RBP11.78□□□□□ -0.52
LINC00540-203ENST00000631321 MFRPQ9BY79 579 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 TRIM2Q9C040 744 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 ZCCHC4Q9H5U6 513 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 CERS4Q9HA82 394 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 MCUBQ9NWR8 336 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 DNAJB12Q9NXW2 375 aaKnown RBP11.78□□□□□ -0.52
LINC00540-203ENST00000631321 NCKAP1Q9Y2A7 1128 aa11.78□□□□□ -0.52
LINC00540-203ENST00000631321 OGG1O15527 345 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 HYAL3O43820 417 aaPredicted RBP11.77□□□□□ -0.52
LINC00540-203ENST00000631321 KLF8O95600 359 aaPredicted RBP11.77□□□□□ -0.52
LINC00540-203ENST00000631321 NGFRP08138 427 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 HNRNPA2B1P22626 353 aaKnown RBP11.77□□□□□ -0.52
LINC00540-203ENST00000631321 BTCP35070 178 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 SLC16A1P53985 500 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 DBPQ10586 325 aaPredicted RBP11.77□□□□□ -0.52
LINC00540-203ENST00000631321 MAB21L1Q13394 359 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 SNAP47Q5SQN1 464 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 FCRLBQ6BAA4 426 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 TMEM184AQ6ZMB5 413 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 GPR135Q8IZ08 494 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 CYB561A3Q8NBI2 242 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 OR5J2Q8NH18 312 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 TRMT10AQ8TBZ6 339 aaKnown RBP11.77□□□□□ -0.52
LINC00540-203ENST00000631321 GRHL3Q8TE85 626 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 IGFLR1Q9H665 355 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 GALNT9Q9HCQ5 603 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 FBXL4Q9UKA2 621 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 ICAM5Q9UMF0 924 aa11.77□□□□□ -0.52
LINC00540-203ENST00000631321 COL4A2P08572 1712 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 A0A0J9YY10 115 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 SLC9B1P1A6NJY1 282 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 AGRPO00253 132 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 ADAM11O75078 769 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 ZNF780AO75290 641 aaPredicted RBP11.77□□□□□ -0.53
LINC00540-203ENST00000631321 CD1AP06126 327 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 PVRP15151 417 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 S1PR1P21453 382 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 RAB38P57729 211 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 UBE2IP63279 158 aaKnown RBP11.77□□□□□ -0.53
LINC00540-203ENST00000631321 GALK2Q01415 458 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 GGTLC2Q14390 218 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 SSX6Q7RTT6 188 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 SYS1Q8N2H4 156 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 CSNK1A1LQ8N752 337 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 OR52R1Q8NGF1 315 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 GHSRQ92847 366 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 ABHD1Q96SE0 405 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 POT1Q9NUX5 634 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 USP36Q9P275 1121 aaKnown RBP11.77□□□□□ -0.53
LINC00540-203ENST00000631321 CHRNA9Q9UGM1 479 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 CACNG2Q9Y698 323 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 TRANK1O15050 2925 aa11.77□□□□□ -0.53
LINC00540-203ENST00000631321 SERPINA3P01011 423 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 EMDP50402 254 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 YPEL5P62699 121 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 ZSWIM7Q19AV6 140 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 SLC25A35Q3KQZ1 300 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 RPTNQ6XPR3 784 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 DGAT2L6Q6ZPD8 337 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 HAVCR2Q8TDQ0 301 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 ABCG5Q9H222 651 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 C7orf66A4D0T2 115 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 ANKRD61A6NGH8 418 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 ARHGEF9O43307 516 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 EEF1E1O43324 174 aaKnown RBP11.76□□□□□ -0.53
LINC00540-203ENST00000631321 FZD7O75084 574 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 EGFP01133 1207 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 PRKCAP17252 672 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 RAB3BP20337 219 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 PYCR1P32322 319 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 ACVR1BP36896 505 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 PSG6Q00889 435 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 SLC36A2Q495M3 483 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 POMGNT2Q8NAT1 580 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 PTCHD1Q96NR3 888 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 WBP1LQ9NX94 342 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 ABRACLQ9P1F3 81 aa11.76□□□□□ -0.53
LINC00540-203ENST00000631321 YBX2Q9Y2T7 364 aaKnown RBP11.76□□□□□ -0.53
LINC00540-203ENST00000631321 NOTOA8MTQ0 251 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 IGKV1D-16P01601 117 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 TFP02787 698 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 OR2T7P0C7T2 308 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 EVI2BP34910 448 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 CDK5R1Q15078 307 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 ZNF141Q15928 474 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 ALG10BQ5I7T1 473 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 LAMTOR1Q6IAA8 161 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 ASB18Q6ZVZ8 466 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 C7orf61Q8IZ16 206 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 GHDCQ8N2G8 530 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 ARHGEF39Q8N4T4 335 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 OR2T27Q8NH04 317 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 GPBAR1Q8TDU6 330 aa11.75□□□□□ -0.53
LINC00540-203ENST00000631321 SMAP2Q8WU79 429 aaPredicted RBP11.75□□□□□ -0.53
LINC00540-203ENST00000631321 SMIM19Q96E16 107 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms