RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 ZNF764Q96H86 408 aaPredicted RBP12.86□□□□□ -0.35
PNKP-218ENST00000625299 FMO2Q99518 471 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 SOX7Q9BT81 388 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 THUMPD3Q9BV44 507 aaKnown RBP12.86□□□□□ -0.35
PNKP-218ENST00000625299 ACTRT3Q9BYD9 372 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 BPESC1Q9GZL8 116 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 FAF1Q9UNN5 650 aaPredicted RBP12.86□□□□□ -0.35
PNKP-218ENST00000625299 MOKQ9UQ07 419 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 CCL27Q9Y4X3 112 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.86□□□□□ -0.35
PNKP-218ENST00000625299 DYSFO75923 2080 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 IGKV3D-15A0A087WSY6 115 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 LOC390937A0A1W2PQ73 354 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 LRP5LA4QPB2 252 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 ZNF716A6NP11 495 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 NPIPB8E9PQR5 432 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 SLC28A1O00337 649 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 EIF4E2O60573 245 aaKnown RBP12.85□□□□□ -0.35
PNKP-218ENST00000625299 TBX19O60806 448 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 MRPL33O75394 65 aaKnown RBP12.85□□□□□ -0.35
PNKP-218ENST00000625299 ITGA5P08648 1049 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 UROSP10746 265 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 MYL2P10916 166 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 ZNF23P17027 643 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 SLC25A3Q00325 362 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 PDE7AQ13946 482 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 PDZK1Q5T2W1 519 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 CASP12Q6UXS9 341 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 FRMD7Q6ZUT3 714 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 MTDHQ86UE4 582 aaKnown RBP12.85□□□□□ -0.35
PNKP-218ENST00000625299 WDR31Q8NA23 367 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 MUS81Q96NY9 551 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 ADAM19Q9H013 955 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 UPB1Q9UBR1 384 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 MALT1Q9UDY8 824 aa12.85□□□□□ -0.35
PNKP-218ENST00000625299 SERINC4A6NH21 518 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 ESPNB1AK53 854 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 H3BQF6 201 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 GPR171O14626 319 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 PRPH2P23942 346 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 GCAP28676 217 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 NTF4P34130 210 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 CCT3P49368 545 aaKnown RBP12.84□□□□□ -0.35
PNKP-218ENST00000625299 SESN3P58005 492 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 PDK3Q15120 406 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 SWI5Q1ZZU3 235 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 MST1LQ2TV78 715 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 GALNTL6Q49A17 601 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 RFTN2Q52LD8 501 aaPredicted RBP12.84□□□□□ -0.35
PNKP-218ENST00000625299 SPATA19Q7Z5L4 167 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 OR56A1Q8NGH5 318 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 OR5D16Q8NGK9 328 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 OR2T11Q8NH01 316 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 PIGXQ8TBF5 258 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 ST8SIA1Q92185 356 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 CCDC126Q96EE4 140 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 METTL2AQ96IZ6 378 aaKnown RBP12.84□□□□□ -0.35
PNKP-218ENST00000625299 TSPYL1Q9H0U9 437 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 SLC17A5Q9NRA2 495 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 AMDHD2Q9Y303 409 aa12.84□□□□□ -0.35
PNKP-218ENST00000625299 NUP214P35658 2090 aaPredicted RBP12.84□□□□□ -0.35
PNKP-218ENST00000625299 NPIPB9F8W1W9 429 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 G3V2L1 256 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 ETV2O00321 342 aaPredicted RBP12.83□□□□□ -0.36
PNKP-218ENST00000625299 KRT16P08779 473 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 UBTFL6P0CB48 400 aaPredicted RBP12.83□□□□□ -0.36
PNKP-218ENST00000625299 CDH2P19022 906 aaPredicted RBP12.83□□□□□ -0.36
PNKP-218ENST00000625299 HPCAL1P37235 193 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 CKAP4Q07065 602 aaKnown RBP12.83□□□□□ -0.36
PNKP-218ENST00000625299 SKP2Q13309 424 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 GPR68Q15743 365 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 LIPMQ5VYY2 423 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 VHLLQ6RSH7 139 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 KLHL24Q6TFL4 600 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 ZYG11AQ6WRX3 759 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 RINLQ6ZS11 566 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 ZNF572Q7Z3I7 529 aaPredicted RBP12.83□□□□□ -0.36
PNKP-218ENST00000625299 R3HCC1LQ7Z5L2 792 aaKnown RBP12.83□□□□□ -0.36
PNKP-218ENST00000625299 LSRQ86X29 649 aaPredicted RBP12.83□□□□□ -0.36
PNKP-218ENST00000625299 CCDC103Q8IW40 242 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 OR7A2PQ8NGA2 310 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 OR5AK3PQ8NH89 298 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 SLC25A43Q8WUT9 341 aaPredicted RBP12.83□□□□□ -0.36
PNKP-218ENST00000625299 TMEM234Q8WY98 164 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 FCRL1Q96LA6 429 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 OR7D2Q96RA2 312 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 LAT2Q9GZY6 243 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 OCEL1Q9H607 264 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 MYOZ1Q9NP98 299 aaPredicted RBP12.83□□□□□ -0.36
PNKP-218ENST00000625299 TMEFF2Q9UIK5 374 aaPredicted RBP12.83□□□□□ -0.36
PNKP-218ENST00000625299 EMCNQ9ULC0 261 aa12.83□□□□□ -0.36
PNKP-218ENST00000625299 SPIN1Q9Y657 262 aaPredicted RBP12.83□□□□□ -0.36
PNKP-218ENST00000625299 TENM1Q9UKZ4 2725 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 CENPVL1A0A0U1RR11 272 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 KLF11O14901 512 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 SLU7O95391 586 aaKnown RBP12.82□□□□□ -0.36
PNKP-218ENST00000625299 CSTAP01040 98 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 LINC00032P0C843 101 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 NEFHP12036 1026 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 DDX5P17844 614 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms