RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 UBE2J2Q8N2K1 259 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 RFLNBQ8N5W9 214 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 SDR9C7Q8NEX9 313 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 SLC25A46Q96AG3 418 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 ZNF524Q96C55 264 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 POM121Q96HA1 1249 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 KCTD7Q96MP8 289 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 ZNF559Q9BR84 538 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 MESP1Q9BRJ9 268 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 KATNB1Q9BVA0 655 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 COMMD3Q9UBI1 195 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 MALT1Q9UDY8 824 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 PRR23D1E9PI22 279 aaPredicted RBP9.77□□□□□ -0.85
CUX1-221ENST00000622516 LMO7DNF2Z398 122 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 CASKO14936 926 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 PRAMEF2O60811 474 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 PRR23D2P0DMB1 279 aaPredicted RBP9.77□□□□□ -0.85
CUX1-221ENST00000622516 ARL4DP49703 201 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 HNRNPKP61978 463 aaKnown RBP eCLIP9.77□□□□□ -0.851e-6■■■■□ 24.1
CUX1-221ENST00000622516 DAB2P98082 770 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 TPBGQ13641 420 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 CD226Q15762 336 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 SMAD2Q15796 467 aaKnown RBP9.77□□□□□ -0.85
CUX1-221ENST00000622516 BAK1Q16611 211 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 GARNL3Q5VVW2 1013 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 TMPRSS11FQ6ZWK6 438 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 MEPCEQ7L2J0 689 aaKnown RBP9.77□□□□□ -0.85
CUX1-221ENST00000622516 RNF113BQ8IZP6 322 aaKnown RBP9.77□□□□□ -0.85
CUX1-221ENST00000622516 LNX2Q8N448 690 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 KLHL36Q8N4N3 616 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 DTX3Q8N9I9 347 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 OR52E2Q8NGJ4 325 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 OR5M3Q8NGP4 307 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 OR4C6Q8NH72 309 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 TEAD3Q99594 435 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 TIMP4Q99727 224 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 ALG8Q9BVK2 526 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.77□□□□□ -0.85
CUX1-221ENST00000622516 PLEKHB1Q9UF11 243 aaPredicted RBP9.77□□□□□ -0.85
CUX1-221ENST00000622516 A3GALT2U3KPV4 340 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 A0A1B0GVT2 93 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 TLCD2A6NGC4 264 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 FAM171A2A8MVW0 826 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 PTP4A3O75365 173 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 RCBTB2O95199 551 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 NXPH1P58417 271 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 C14orf28Q4W4Y0 310 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 FAM27D1Q5T7N8 215 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 VASNQ6EMK4 673 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 ZNF613Q6PF04 617 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 POMZP3Q6PJE2 187 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 ZNF322Q6U7Q0 402 aaPredicted RBP9.76□□□□□ -0.85
CUX1-221ENST00000622516 APOOLQ6UXV4 268 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 TMPRSS11AQ6ZMR5 421 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 GDPGP1Q6ZNW5 385 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 Q7L0L9 218 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 SLC25A45Q8N413 288 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 ZNF615Q8N8J6 731 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 TOR1AIP2Q8NFQ8 470 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 OR6C4Q8NGE1 309 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 PTPMT1Q8WUK0 201 aaPredicted RBP9.76□□□□□ -0.85
CUX1-221ENST00000622516 HPS1Q92902 700 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 KISS1RQ969F8 398 aaPredicted RBP9.76□□□□□ -0.85
CUX1-221ENST00000622516 ERMAPQ96PL5 475 aaPredicted RBP9.76□□□□□ -0.85
CUX1-221ENST00000622516 MCCC2Q9HCC0 563 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 FSCN3Q9NQT6 498 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 CUTCQ9NTM9 273 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 RPS6KB2Q9UBS0 482 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 FER1L5A0AVI2 2057 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 CEP192Q8TEP8 1941 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 DAPL1A0PJW8 107 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 FAM86C2PA6NEL3 165 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 CLPSP04118 112 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 FOLR1P15328 257 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 ATP12AP54707 1039 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 CTAG1AP78358 180 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 ZP2Q05996 745 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.76□□□□□ -0.85
CUX1-221ENST00000622516 FHL1Q13642 323 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 ZNF181Q2M3W8 571 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 GDPD3Q7L5L3 318 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 MARCH9Q86YJ5 346 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 ACBD7Q8N6N7 88 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 ATP6V1C2Q8NEY4 427 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 ZNRF4Q8WWF5 429 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 ZMYND19Q96E35 227 aaPredicted RBP9.76□□□□□ -0.85
CUX1-221ENST00000622516 ADOQ96SZ5 270 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 NXF5Q9H1B4 397 aaKnown RBP9.76□□□□□ -0.85
CUX1-221ENST00000622516 KLHL1Q9NR64 748 aa9.76□□□□□ -0.85
CUX1-221ENST00000622516 CRNNQ9UBG3 495 aaPredicted RBP9.76□□□□□ -0.85
CUX1-221ENST00000622516 EXOGQ9Y2C4 368 aaKnown RBP9.76□□□□□ -0.85
CUX1-221ENST00000622516 LILRA5A6NI73 299 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 MCIDASD6RGH6 385 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 SOX1O00570 391 aaPredicted RBP9.75□□□□□ -0.85
CUX1-221ENST00000622516 PIAS2O75928 621 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 IGHA1P01876 353 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 GSTT2P0CG29 244 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 GSTT2BP0CG30 244 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 HPGDP15428 266 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 HIST1H1CP16403 213 aaKnown RBP9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms