RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 OSTF1Q92882 214 aa14.31□□□□□ -0.12
BRCA1-228ENST00000618469 STARD4Q96DR4 205 aa14.31□□□□□ -0.12
BRCA1-228ENST00000618469 OPN3Q9H1Y3 402 aaPredicted RBP14.31□□□□□ -0.12
BRCA1-228ENST00000618469 MTHFD2LQ9H903 347 aaPredicted RBP14.31□□□□□ -0.12
BRCA1-228ENST00000618469 CACYBPQ9HB71 228 aaKnown RBP14.31□□□□□ -0.12
BRCA1-228ENST00000618469 ACER3Q9NUN7 267 aa14.31□□□□□ -0.12
BRCA1-228ENST00000618469 CRIM1Q9NZV1 1036 aa14.31□□□□□ -0.12
BRCA1-228ENST00000618469 VAPAQ9P0L0 249 aa14.31□□□□□ -0.12
BRCA1-228ENST00000618469 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.31□□□□□ -0.12
BRCA1-228ENST00000618469 EMC9Q9Y3B6 208 aa14.31□□□□□ -0.12
BRCA1-228ENST00000618469 ABCA2Q9BZC7 2435 aa14.31□□□□□ -0.12
BRCA1-228ENST00000618469 DNHD1Q96M86 4753 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 A0A1W2PNR3 127 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 A0A1W2PP18 115 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 MSTNO14793 375 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 ANGPT2O15123 496 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 ADAM11O75078 769 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 PPIBP23284 216 aaKnown RBP14.3□□□□□ -0.12
BRCA1-228ENST00000618469 CTBP2P56545 445 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 CARD18P57730 90 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 SORDQ00796 357 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 FOXD4Q12950 439 aaPredicted RBP14.3□□□□□ -0.12
BRCA1-228ENST00000618469 GUSBP1Q15486 140 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 GCNT6Q5T4J0 391 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 FAM214BQ7L5A3 538 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 BTLAQ7Z6A9 289 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 DHDDSQ86SQ9 333 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 VRK2Q86Y07 508 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 OR52P1PQ8NH57 321 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 PMM1Q92871 262 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 MAL2Q969L2 176 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 CPNE4Q96A23 557 aaPredicted RBP14.3□□□□□ -0.12
BRCA1-228ENST00000618469 REXO5Q96IC2 774 aaKnown RBP14.3□□□□□ -0.12
BRCA1-228ENST00000618469 GMPPAQ96IJ6 420 aaPredicted RBP14.3□□□□□ -0.12
BRCA1-228ENST00000618469 A4GALTQ9NPC4 353 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 TIGARQ9NQ88 270 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 LEF1Q9UJU2 399 aaPredicted RBP14.3□□□□□ -0.12
BRCA1-228ENST00000618469 PROCRQ9UNN8 238 aa14.3□□□□□ -0.12
BRCA1-228ENST00000618469 ZNF443Q9Y2A4 671 aaPredicted RBP14.3□□□□□ -0.12
BRCA1-228ENST00000618469 TRBV5-3A0A0A0MS03 114 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 TUBAL3A6NHL2 446 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 C5orf58C9J3I9 102 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 SS18L1O75177 396 aaPredicted RBP14.29□□□□□ -0.12
BRCA1-228ENST00000618469 BMP2P12643 396 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 IDH2P48735 452 aaKnown RBP14.29□□□□□ -0.12
BRCA1-228ENST00000618469 SYT14P1Q58G82 188 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 CGB2Q6NT52 195 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 GRINAQ7Z429 371 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 C10orf111Q8N326 155 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 BBS10Q8TAM1 723 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 RNF128Q8TEB7 428 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 ABHD3Q8WU67 409 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 SLC25A43Q8WUT9 341 aaPredicted RBP14.29□□□□□ -0.12
BRCA1-228ENST00000618469 ROBO4Q8WZ75 1007 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 OR5B2Q96R09 309 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 SMR3AQ99954 134 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 IKZF5Q9H5V7 419 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 CTPS2Q9NRF8 586 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 SERINC1Q9NRX5 453 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 RLIMQ9NVW2 624 aa14.29□□□□□ -0.12
BRCA1-228ENST00000618469 SPIN1Q9Y657 262 aaPredicted RBP14.29□□□□□ -0.12
BRCA1-228ENST00000618469 IGHV3-15A0A0B4J1V0 119 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 A0A0G2JPF8 293 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 CDHR4A6H8M9 788 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 CFAP73A6NFT4 308 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 A8MXE2 369 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 HNRNPCL2B2RXH8 293 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 HNRNPCL3B7ZW38 293 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 HNRNPCL1O60812 293 aaKnown RBP14.28□□□□□ -0.12
BRCA1-228ENST00000618469 THBS1P07996 1170 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 HNRNPCL4P0DMR1 293 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 ARAFP10398 606 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 CD8BP10966 210 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 UQCRBP14927 111 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 AGTR1P30556 359 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 KCNJ5P48544 419 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 ARFIP2P53365 341 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 EPS8Q12929 822 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 LARS2Q15031 903 aaKnown RBP14.28□□□□□ -0.12
BRCA1-228ENST00000618469 RNF220Q5VTB9 566 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 METTL21CQ5VZV1 264 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 FCRLAQ7L513 359 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 LSRQ86X29 649 aaPredicted RBP14.28□□□□□ -0.12
BRCA1-228ENST00000618469 OR6K3Q8NGY3 331 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 NFKBIDQ8NI38 313 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 LINC01560Q8TB33 94 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 FAM222BQ8WU58 562 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 CPPED1Q9BRF8 314 aaPredicted RBP14.28□□□□□ -0.12
BRCA1-228ENST00000618469 CCDC106Q9BWC9 280 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 CHRNA9Q9UGM1 479 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 CORO2BQ9UQ03 480 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 NDUFAF1Q9Y375 327 aa14.28□□□□□ -0.12
BRCA1-228ENST00000618469 CGAP01215 116 aa14.27□□□□□ -0.13
BRCA1-228ENST00000618469 PABPC4LP0CB38 370 aaKnown RBP14.27□□□□□ -0.13
BRCA1-228ENST00000618469 GKN3PP0CG01 181 aa14.27□□□□□ -0.13
BRCA1-228ENST00000618469 TFPIP10646 304 aa14.27□□□□□ -0.13
BRCA1-228ENST00000618469 CCNA2P20248 432 aa14.27□□□□□ -0.13
BRCA1-228ENST00000618469 APOBEC1P41238 236 aaKnown RBP14.27□□□□□ -0.13
BRCA1-228ENST00000618469 PRAMEF8Q5VWM4 474 aa14.27□□□□□ -0.13
BRCA1-228ENST00000618469 PRAMEF7Q5VXH5 474 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms