RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ADAD1Q96M93 576 aaKnown RBP7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 DHRS9Q9BPW9 319 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 SOX7Q9BT81 388 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 MECRQ9BV79 373 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 GATA5Q9BWX5 397 aaPredicted RBP7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 ACTRT3Q9BYD9 372 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 EML4Q9HC35 981 aaKnown RBP7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 DUSP22Q9NRW4 184 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 ACSS1Q9NUB1 689 aaPredicted RBP7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 FAIMQ9NVQ4 179 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 OXSMQ9NWU1 459 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 DCDC2Q9UHG0 476 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 CDC42EP3Q9UKI2 254 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 MKLN1Q9UL63 735 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 DTNAQ9Y4J8 743 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 DNAJC15Q9Y5T4 150 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 SLC25A15Q9Y619 301 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 ATP23Q9Y6H3 246 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 TENM3Q9P273 2699 aa7.59□□□□□ -1.19
SHKBP1-220ENST00000599716 ELOA3DA6NLF2 546 aaPredicted RBP7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 CLDN24A6NM45 220 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 GJE1A6NN92 205 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 ZNF716A6NP11 495 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 ATP6V1G2-DDX39BF2Z307 99 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 H3BNH8 94 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 SULT2B1O00204 365 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 KLF11O14901 512 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 ZNF264O43296 627 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 LMX1BO60663 402 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 TBX19O60806 448 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 SLU7O95391 586 aaKnown RBP7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 PGM3O95394 542 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 ITGA5P08648 1049 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 IFI6P09912 130 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 CDH2P19022 906 aaPredicted RBP7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 ARRB2P32121 409 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 THBS2P35442 1172 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 HPCAL1P37235 193 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 SUMO3P55854 103 aaPredicted RBP7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 DNAJB13P59910 316 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 PLAURQ03405 335 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 LOXL1Q08397 574 aaPredicted RBP7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 SKP2Q13309 424 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 PCLAFQ15004 111 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 GABRA6Q16445 453 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 MAPK14Q16539 360 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 NRF1Q16656 503 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 WHAMMP3Q1A5X7 153 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 ELOA3BQ3SY89 546 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 SLC25A53Q5H9E4 307 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 KANK2Q63ZY3 851 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 CYB5R2Q6BCY4 276 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 ABLIM2Q6H8Q1 611 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 C3orf33Q6P1S2 294 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 TMEM108Q6UXF1 575 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 ZCCHC23Q6ZST2 131 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 MTERF4Q7Z6M4 381 aaKnown RBP7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 GALNT5Q7Z7M9 940 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 CLECL1Q8IZS7 167 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 ANKS4BQ8N8V4 417 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 WDR31Q8NA23 367 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 TOR1AIP2Q8NFQ8 470 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 ELOA3Q8NG57 546 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 ACMSDQ8TDX5 336 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 EPS8L3Q8TE67 593 aaKnown RBP7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 TWIST2Q8WVJ9 160 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 RAB8BQ92930 207 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 MSI2Q96DH6 328 aaKnown RBP7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 CCDC126Q96EE4 140 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 FBXO17Q96EF6 278 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 STACQ99469 402 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 SDF2Q99470 211 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 RHOXF2Q9BQY4 288 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 PRR14Q9BWN1 585 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 SHARPINQ9H0F6 387 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 TSPYL1Q9H0U9 437 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 CTPS2Q9NRF8 586 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 ATP6V1HQ9UI12 483 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 FAF1Q9UNN5 650 aaPredicted RBP7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 WBP11Q9Y2W2 641 aaKnown RBP7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 NOSIPQ9Y314 301 aaKnown RBP7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 ACTL7BQ9Y614 415 aa7.58□□□□□ -1.2
SHKBP1-220ENST00000599716 IGHV4-61A0A0C4DH41 118 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 LOC100289279A0A1B0GTE1 492 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 ZNF724A8MTY0 619 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 KIF2AO00139 706 aaPredicted RBP7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 AP3D1O14617 1153 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 CFLARO15519 480 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 UGT2B17O75795 530 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 DHRS4L1P0CG22 281 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 SRD5A1P18405 259 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 USF1P22415 310 aaPredicted RBP7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 HBA1P69905 142 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 LGALS3BPQ08380 585 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 CBFBQ13951 182 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 UGT3A2Q3SY77 523 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 SYT14P1Q58G82 188 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 ARL13AQ5H913 290 aaPredicted RBP7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 FAM120AOSQ5T036 256 aa7.57□□□□□ -1.2
SHKBP1-220ENST00000599716 FBXW9Q5XUX1 488 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms