RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 FAM174BQ3ZCQ3 159 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 CEP85LQ5SZL2 805 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 NCMAPQ5T1S8 102 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 TYW3Q6IPR3 259 aaKnown RBP8.69□□□□□ -1.02
VRK3-216ENST00000599342 ADAM5Q6NVV9 412 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 TMPPEQ6ZT21 453 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 SSX8Q7RTT4 187 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 GRINAQ7Z429 371 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 GALNT5Q7Z7M9 940 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 CROCCP2Q86T23 111 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 ARFGAP2Q8N6H7 521 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 FAM71CQ8NEG0 241 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 GTPBP3Q969Y2 492 aaKnown RBP8.69□□□□□ -1.02
VRK3-216ENST00000599342 ZNF524Q96C55 264 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 MUCL1Q96DR8 90 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 NEURL3Q96EH8 262 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 TRMT61AQ96FX7 289 aaKnown RBP8.69□□□□□ -1.02
VRK3-216ENST00000599342 ZNF300Q96RE9 604 aaPredicted RBP8.69□□□□□ -1.02
VRK3-216ENST00000599342 SORT1Q99523 831 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 PARD6BQ9BYG5 372 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 MEAF6Q9HAF1 191 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.69□□□□□ -1.02
VRK3-216ENST00000599342 ACER3Q9NUN7 267 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 ZNF701Q9NV72 531 aaPredicted RBP8.69□□□□□ -1.02
VRK3-216ENST00000599342 CHRNA9Q9UGM1 479 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 PRSS50Q9UI38 385 aa8.69□□□□□ -1.02
VRK3-216ENST00000599342 A0A1W2PP18 115 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 C9JVG2 144 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 SCN2BO60939 215 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 GGT1P19440 569 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 FKBP2P26885 142 aaKnown RBP8.68□□□□□ -1.02
VRK3-216ENST00000599342 NME5P56597 212 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 PHC1P78364 1004 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 KCNJ10P78508 379 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 TXNL4AP83876 142 aaKnown RBP8.68□□□□□ -1.02
VRK3-216ENST00000599342 BSPH1Q075Z2 132 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 FUT5Q11128 374 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 VEZF1Q14119 521 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 GNA13Q14344 377 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 PPA1Q15181 289 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 MAPK14Q16539 360 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 HHATQ5VTY9 493 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 ABLIM2Q6H8Q1 611 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 OGFOD2Q6N063 350 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 FRRS1Q6ZNA5 592 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.68□□□□□ -1.02
VRK3-216ENST00000599342 HMGN2P46Q86SG4 172 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 MTDHQ86UE4 582 aaKnown RBP8.68□□□□□ -1.02
VRK3-216ENST00000599342 UBE2J2Q8N2K1 259 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 ANKRD42Q8N9B4 389 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 KBTBD8Q8NFY9 601 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 PIGXQ8TBF5 258 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 PIWIL2Q8TC59 973 aaKnown RBP8.68□□□□□ -1.02
VRK3-216ENST00000599342 IGFBPL1Q8WX77 278 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 ZNF775Q96BV0 537 aaPredicted RBP8.68□□□□□ -1.02
VRK3-216ENST00000599342 CCDC115Q96NT0 180 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 PANX1Q96RD7 426 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 ZBTB18Q99592 522 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 CCDC106Q9BWC9 280 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 SAP130Q9H0E3 1048 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 ALG2Q9H553 416 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 EXOSC3Q9NQT5 275 aaKnown RBP8.68□□□□□ -1.02
VRK3-216ENST00000599342 CTPS2Q9NRF8 586 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 FAIMQ9NVQ4 179 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 BTNL2Q9UIR0 455 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 HAO1Q9UJM8 370 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 ING1Q9UK53 422 aaPredicted RBP8.68□□□□□ -1.02
VRK3-216ENST00000599342 NOSIPQ9Y314 301 aaKnown RBP8.68□□□□□ -1.02
VRK3-216ENST00000599342 HDGFL3Q9Y3E1 203 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 DSCAMO60469 2012 aa8.68□□□□□ -1.02
VRK3-216ENST00000599342 CIB4A0PJX0 185 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 CCDC154A6NI56 674 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 TRPC5OSA6NMA1 111 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 HMGN4O00479 90 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 PMS2P2O95744 297 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 PGRP06401 933 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 UQCRBP14927 111 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 COX5AP20674 150 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 IGHV1-2P23083 117 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 PCSK6P29122 969 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 HTR3AP46098 478 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 IDH2P48735 452 aaKnown RBP8.67□□□□□ -1.02
VRK3-216ENST00000599342 UFM1P61960 85 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 CHRNEQ04844 493 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 LRRC74AQ0VAA2 488 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 BST1Q10588 318 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 PDK3Q15120 406 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 ETFDHQ16134 617 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 CLEC12BQ2HXU8 276 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 ZNF672Q499Z4 452 aaPredicted RBP8.67□□□□□ -1.02
VRK3-216ENST00000599342 TIMM23BQ5SRD1 257 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 SPATA19Q7Z5L4 167 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 P2RY8Q86VZ1 359 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 RNF130Q86XS8 419 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 CMIPQ8IY22 773 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 SMAP2Q8WU79 429 aaPredicted RBP8.67□□□□□ -1.02
VRK3-216ENST00000599342 ZNF75CPQ92670 426 aaPredicted RBP8.67□□□□□ -1.02
VRK3-216ENST00000599342 APH1AQ96BI3 265 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 DDIT4LQ96D03 193 aa8.67□□□□□ -1.02
VRK3-216ENST00000599342 DNAJA3Q96EY1 480 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms