RNA–Protein interactions for RNA: ENST00000598808.5

IRF3-221, Transcript of interferon regulatory factor 3, human

TSL 5 BASIC

Gene IRF3, Length 1,468 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-221	ENST00000598808	SLC13A4	Q9UKG4	626 aa		18.2	■□□□□ 0.5
IRF3-221	ENST00000598808	RAB26	Q9ULW5	256 aa		18.2	■□□□□ 0.5
IRF3-221	ENST00000598808	USP22	Q9UPT9	525 aa		18.2	■□□□□ 0.5
IRF3-221	ENST00000598808	ZNF835	Q9Y2P0	537 aa		18.2	■□□□□ 0.5
IRF3-221	ENST00000598808	OR2M5	A3KFT3	312 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	SERPINB7	O75635	380 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	THBS1	P07996	1170 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	UQCRB	P14927	111 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	PGC	P20142	388 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	PCGF2	P35227	344 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	ADH7	P40394	386 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	QPRT	Q15274	297 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	TOMM34	Q15785	309 aa	Predicted RBP	18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	VASN	Q6EMK4	673 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	POMZP3	Q6PJE2	187 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	DOLPP1	Q86YN1	238 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	ARMC8	Q8IUR7	673 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	GPR119	Q8TDV5	335 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	TIMP4	Q99727	224 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	CHID1	Q9BWS9	393 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	TP63	Q9H3D4	680 aa	Predicted RBP	18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	TMEM185B	Q9H7F4	350 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	DNAJB12	Q9NXW2	375 aa	Known RBP	18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	SLC5A6	Q9Y289	635 aa		18.19	■□□□□ 0.5
IRF3-221	ENST00000598808	MRPS18C	Q9Y3D5	142 aa	Known RBP	18.19	■□□□□ 0.5
IRF3-221	ENST00000598808		A0A1B0GUH1	482 aa		18.18	■□□□□ 0.5
IRF3-221	ENST00000598808	OPN1SW	P03999	348 aa		18.18	■□□□□ 0.5
IRF3-221	ENST00000598808	ETS2	P15036	469 aa		18.18	■□□□□ 0.5
IRF3-221	ENST00000598808	GFRA1	P56159	465 aa		18.18	■□□□□ 0.5
IRF3-221	ENST00000598808	LRRC36	Q1X8D7	754 aa		18.18	■□□□□ 0.5
IRF3-221	ENST00000598808	C4orf17	Q53FE4	359 aa		18.18	■□□□□ 0.5
IRF3-221	ENST00000598808	PPP4R4	Q6NUP7	873 aa		18.18	■□□□□ 0.5
IRF3-221	ENST00000598808		Q6ZPB1	254 aa	Predicted RBP	18.18	■□□□□ 0.5
IRF3-221	ENST00000598808	PM20D2	Q8IYS1	436 aa		18.18	■□□□□ 0.5
IRF3-221	ENST00000598808	ATP6V1C2	Q8NEY4	427 aa		18.18	■□□□□ 0.5
IRF3-221	ENST00000598808	SEMA7A	O75326	666 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	LINGO3	P0C6S8	592 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	GKN3P	P0CG01	181 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	PEPD	P12955	493 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	ZNF17	P17021	662 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	CHM	P24386	653 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	SLC6A8	P48029	635 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	AQP4	P55087	323 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	B3GALT5-AS1	P59052	145 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	GLYR1	Q49A26	553 aa	Predicted RBP	18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	NHSL2	Q5HYW2	709 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	HMBOX1	Q6NT76	420 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	SMYD1	Q8NB12	490 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	FAM71C	Q8NEG0	241 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	NPAS1	Q99742	590 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	ZNF337	Q9Y3M9	751 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	GPC6	Q9Y625	555 aa	Predicted RBP	18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	GTF3C1	Q12789	2109 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	PCNX3	Q9H6A9	2034 aa		18.17	■□□□□ 0.5
IRF3-221	ENST00000598808	CDHR4	A6H8M9	788 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	AP3D1	O14617	1153 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	FRS3	O43559	492 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	DENR	O43583	198 aa	Known RBP	18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	PRSS23	O95084	383 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	OPN1LW	P04000	364 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	GP1BB	P13224	206 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	ZNF26	P17031	533 aa	Predicted RBP	18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	ACVR2A	P27037	513 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	KDELR2	P33947	212 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	EIF1	P41567	113 aa	Known RBP	18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	PER3	P56645	1201 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	EEF1A1	P68104	462 aa	Known RBP	18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	RNF220	Q5VTB9	566 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	ZBTB49	Q6ZSB9	765 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	CHMP1B	Q7LBR1	199 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	PATL1	Q86TB9	770 aa	Known RBP	18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	ZNF440	Q8IYI8	595 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	CLIP4	Q8N3C7	705 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	MEIOB	Q8N635	442 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	TMEM234	Q8WY98	164 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	SLC47A1	Q96FL8	570 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	PYURF	Q96I23	114 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	EXOSC3	Q9NQT5	275 aa	Known RBP	18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	DNAJB9	Q9UBS3	223 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	MED12	Q93074	2177 aa		18.16	■□□□□ 0.5
IRF3-221	ENST00000598808	CLOCK	O15516	846 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	WDR1	O75083	606 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	SERPINA1	P01009	418 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	PRKCA	P17252	672 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	PRKAR1B	P31321	381 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	IDH2	P48735	452 aa	Known RBP	18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	LHX2	P50458	406 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	MERTK	Q12866	999 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	MED21	Q13503	144 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	LRRC23	Q53EV4	343 aa	Predicted RBP	18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	EMC4	Q5J8M3	183 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	C1orf185	Q5T7R7	199 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	AP1AR	Q63HQ0	302 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	NCCRP1	Q6ZVX7	275 aa	Predicted RBP	18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	ZNF550	Q7Z398	422 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	AMIGO2	Q86SJ2	522 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	CADM2	Q8N3J6	435 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	WDYHV1	Q96HA8	205 aa		18.15	■□□□□ 0.5
IRF3-221	ENST00000598808	TRIB1	Q96RU8	372 aa		18.15	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 39 ms