RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ZDHHC24Q6UX98 284 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 TMPPEQ6ZT21 453 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 SPATA19Q7Z5L4 167 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 GLCCI1Q86VQ1 547 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 RFWD2Q8NHY2 731 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 PIGXQ8TBF5 258 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 SLC25A43Q8WUT9 341 aaPredicted RBP8.84□□□□□ -0.99
TRIM28-210ENST00000597618 CDS1Q92903 461 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 CHMP6Q96FZ7 201 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 C16orf58Q96GQ5 468 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 SNX18Q96RF0 628 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 KCNA7Q96RP8 456 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 NAPGQ99747 312 aaPredicted RBP8.84□□□□□ -0.99
TRIM28-210ENST00000597618 KCNS3Q9BQ31 491 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 RBM4Q9BWF3 364 aaKnown RBP8.84□□□□□ -0.99
TRIM28-210ENST00000597618 SAP130Q9H0E3 1048 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 RAB17Q9H0T7 212 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 CA10Q9NS85 328 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 ACSS1Q9NUB1 689 aaPredicted RBP8.84□□□□□ -0.99
TRIM28-210ENST00000597618 PRKDCP78527 4128 aaKnown RBP8.83□□□□□ -1
TRIM28-210ENST00000597618 B4DSR2 109 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 ZNF264O43296 627 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 DNPH1O43598 174 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 EIF4E2O60573 245 aaKnown RBP8.83□□□□□ -1
TRIM28-210ENST00000597618 LILRA1O75019 489 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 RSL1D1O76021 490 aaKnown RBP8.83□□□□□ -1
TRIM28-210ENST00000597618 UBL4AP11441 157 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 IMPDH1P20839 514 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 SLC16A1P53985 500 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 ATP12AP54707 1039 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 FOXG1P55316 489 aaPredicted RBP8.83□□□□□ -1
TRIM28-210ENST00000597618 DCST2Q5T1A1 773 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.83□□□□□ -1
TRIM28-210ENST00000597618 C9orf135Q5VTT2 229 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 ANKRD26P1Q6NSI1 321 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 CDC73Q6P1J9 531 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 SHQ1Q6PI26 577 aaKnown RBP8.83□□□□□ -1
TRIM28-210ENST00000597618 CASP12Q6UXS9 341 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 USP43Q70EL4 1123 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 TRIM46Q7Z4K8 759 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 ZNF614Q8N883 585 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 OR52E4Q8NGH9 312 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 NEU4Q8WWR8 484 aaPredicted RBP8.83□□□□□ -1
TRIM28-210ENST00000597618 ST8SIA1Q92185 356 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 ZNF524Q96C55 264 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 PPCDCQ96CD2 204 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 METTL2AQ96IZ6 378 aaKnown RBP8.83□□□□□ -1
TRIM28-210ENST00000597618 QRSL1Q9H0R6 528 aaKnown RBP8.83□□□□□ -1
TRIM28-210ENST00000597618 PIGUQ9H490 435 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 PLK3Q9H4B4 646 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 RRAGDQ9NQL2 400 aaPredicted RBP8.83□□□□□ -1
TRIM28-210ENST00000597618 UPB1Q9UBR1 384 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 DTNAQ9Y4J8 743 aa8.83□□□□□ -1
TRIM28-210ENST00000597618 SPIN1Q9Y657 262 aaPredicted RBP8.83□□□□□ -1
TRIM28-210ENST00000597618 A0A0G2JK05 382 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 TBX19O60806 448 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 SLU7O95391 586 aaKnown RBP8.82□□□□□ -1
TRIM28-210ENST00000597618 CRYAAP02489 173 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 HMGN2P05204 90 aaKnown RBP8.82□□□□□ -1
TRIM28-210ENST00000597618 OR4A8P0C604 315 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 DDX5P17844 614 aaKnown RBP8.82□□□□□ -1
TRIM28-210ENST00000597618 PGCP20142 388 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 ATP5F1P24539 256 aaPredicted RBP8.82□□□□□ -1
TRIM28-210ENST00000597618 FRKP42685 505 aaPredicted RBP8.82□□□□□ -1
TRIM28-210ENST00000597618 SLC1A3P43003 542 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 LIMS1P48059 325 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 PRKAA2P54646 552 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 HILS1P60008 231 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 GNG11P61952 73 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 MERTKQ12866 999 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 LASP1Q14847 261 aaKnown RBP8.82□□□□□ -1
TRIM28-210ENST00000597618 ADIPOQQ15848 244 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 SLC22A9Q8IVM8 553 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 SPATA4Q8NEY3 305 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 TMEM234Q8WY98 164 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 FAM120BQ96EK7 910 aaKnown RBP8.82□□□□□ -1
TRIM28-210ENST00000597618 L3HYPDHQ96EM0 354 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 EGLN2Q96KS0 407 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 JMJD8Q96S16 334 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 PAFAH2Q99487 392 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 CCT7Q99832 543 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 KATNB1Q9BVA0 655 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 REEP4Q9H6H4 257 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 ZNF696Q9H7X3 374 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 MID1IP1Q9NPA3 183 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 OBP2BQ9NPH6 170 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 ZCCHC3Q9NUD5 404 aaKnown RBP8.82□□□□□ -1
TRIM28-210ENST00000597618 PARPBPQ9NWS1 579 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 PCDHB10Q9UN67 800 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 SLC9A8Q9Y2E8 581 aa8.82□□□□□ -1
TRIM28-210ENST00000597618 ESPNB1AK53 854 aa8.81□□□□□ -1
TRIM28-210ENST00000597618 TRIM49D1C9J1S8 452 aa8.81□□□□□ -1
TRIM28-210ENST00000597618 NPIPB8E9PQR5 432 aa8.81□□□□□ -1
TRIM28-210ENST00000597618 NPIPB9F8W1W9 429 aa8.81□□□□□ -1
TRIM28-210ENST00000597618 DNAJA2O60884 412 aa8.81□□□□□ -1
TRIM28-210ENST00000597618 PMS2P2O95744 297 aa8.81□□□□□ -1
TRIM28-210ENST00000597618 KRT16P08779 473 aa8.81□□□□□ -1
TRIM28-210ENST00000597618 TFPIP10646 304 aa8.81□□□□□ -1
TRIM28-210ENST00000597618 IFNGR1P15260 489 aa8.81□□□□□ -1
TRIM28-210ENST00000597618 PAX7P23759 505 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms