RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CSNK1A1P48729 337 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 RAB25P57735 213 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 GAB1Q13480 694 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 RBM48Q5RL73 367 aaKnown RBP9.1□□□□□ -0.95
LIG3-216ENST00000593099 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.1□□□□□ -0.95
LIG3-216ENST00000593099 CAMKMTQ7Z624 323 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 LIX1LQ8IVB5 337 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 TMEM102Q8N9M5 508 aaPredicted RBP9.1□□□□□ -0.95
LIG3-216ENST00000593099 OR51G2Q8NGK0 314 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 UCN3Q969E3 161 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 MFRPQ9BY79 579 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 TRIM36Q9NQ86 728 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 EIF3KQ9UBQ5 218 aaKnown RBP9.1□□□□□ -0.95
LIG3-216ENST00000593099 EMC9Q9Y3B6 208 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 TRAV17A0A0B4J275 112 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 SUSD5O60279 629 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 PLOD3O60568 738 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 LRP3O75074 770 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 OR2J2O76002 312 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 HTR1AP08908 422 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 ACVR1BP36896 505 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 RNF4P78317 190 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 SLC35A1P78382 337 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 NKG7Q16617 165 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 MICAQ29983 383 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 ZNF385BQ569K4 471 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 COX20Q5RI15 118 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 LEG1Q6P5S2 330 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 XKR5Q6UX68 686 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 THAP4Q8WY91 577 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 CNRIP1Q96F85 164 aaPredicted RBP9.1□□□□□ -0.95
LIG3-216ENST00000593099 TEX37Q96LM6 180 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 SAMD8Q96LT4 415 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 ZNF583Q96ND8 569 aa9.1□□□□□ -0.95
LIG3-216ENST00000593099 A0A1B0GTL3 188 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 LNP1A1A4G5 178 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 ANXA2P2A6NMY6 339 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 C21orf140B9A014 251 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 K7ESF4 209 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 PRRG2O14669 202 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 LILRB5O75023 590 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 ANXA2P07355 339 aaKnown RBP9.09□□□□□ -0.95
LIG3-216ENST00000593099 T-ENOLP0DO92 83 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 CRABP1P29762 137 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 ARF1P84077 181 aaKnown RBP9.09□□□□□ -0.95
LIG3-216ENST00000593099 NPRL3Q12980 569 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 PDE7AQ13946 482 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 FAM122CQ6P4D5 195 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 PAMR1Q6UXH9 720 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 ZER1Q7Z7L7 766 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 VASH2Q86V25 355 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 PLCZ1Q86YW0 608 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 IZUMO1Q8IYV9 350 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 ANKK1Q8NFD2 765 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 CT55Q8WUE5 264 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 FAR1Q8WVX9 515 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 MROQ9BYG7 248 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 TNFRSF12AQ9NP84 129 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 CNIH4Q9P003 139 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 FBXL4Q9UKA2 621 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 RBM7Q9Y580 266 aaKnown RBP9.09□□□□□ -0.95
LIG3-216ENST00000593099 TMED7-TICAM2A0A0A6YYA0 188 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 OR2W5A6NFC9 320 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 MRPL33O75394 65 aaKnown RBP9.09□□□□□ -0.95
LIG3-216ENST00000593099 OSMP13725 252 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 MNDAP41218 407 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 EMP3P54852 163 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 ACTC1P68032 377 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 ACTA1P68133 377 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 GALK2Q01415 458 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 CRTC2Q53ET0 693 aaPredicted RBP9.09□□□□□ -0.95
LIG3-216ENST00000593099 SAXO2Q658L1 398 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 TCTN3Q6NUS6 607 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 SSX9Q7RTT3 188 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 SFTPA2Q8IWL1 248 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 OR5J2Q8NH18 312 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 SDF2Q99470 211 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 TMEM121BQ9BXQ6 578 aaPredicted RBP9.09□□□□□ -0.95
LIG3-216ENST00000593099 FAM117AQ9C073 453 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 TPK1Q9H3S4 243 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 CDH20Q9HBT6 801 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 GNG8Q9UK08 70 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 TMED7Q9Y3B3 224 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 WRBO00258 174 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 ITGA10O75578 1167 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 C1QAP02745 245 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 PNLIPRP2P54317 469 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 SLC10A1Q14973 349 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 ZNF57Q68EA5 555 aaPredicted RBP9.09□□□□□ -0.95
LIG3-216ENST00000593099 DND1Q8IYX4 353 aaKnown RBP9.09□□□□□ -0.95
LIG3-216ENST00000593099 OR2Y1Q8NGV0 311 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 SLC25A43Q8WUT9 341 aaPredicted RBP9.09□□□□□ -0.95
LIG3-216ENST00000593099 TTC9Q92623 222 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 SARAFQ96BY9 339 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 PITX2Q99697 317 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 NXF5Q9H1B4 397 aaKnown RBP9.09□□□□□ -0.95
LIG3-216ENST00000593099 ZNF337Q9Y3M9 751 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 ASB4Q9Y574 426 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 ABCA7Q8IZY2 2146 aa9.09□□□□□ -0.95
LIG3-216ENST00000593099 GPR171O14626 319 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 268.9 ms