RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 GAS1P54826 345 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 VBP1P61758 197 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 MC2RQ01718 297 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 ANKDD1AQ495B1 522 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 FAAH2Q6GMR7 532 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 ARHGAP11AQ6P4F7 1023 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 DBX2Q6ZNG2 339 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 GDPGP1Q6ZNW5 385 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 USP43Q70EL4 1123 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 CROCCP3Q8IVE0 287 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 CPOQ8IVL8 374 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 MISPQ8IVT2 679 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 PSD4Q8NDX1 1056 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 NFAM1Q8NET5 270 aaPredicted RBP12.99□□□□□ -0.33
LIG3-205ENST00000585941 DYNC2LI1Q8TCX1 351 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 LPAR4Q99677 370 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 TAPBPLQ9BX59 468 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 JAM3Q9BX67 310 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 TBL1XR1Q9BZK7 514 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 PLGRKTQ9HBL7 147 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 FBXO8Q9NRD0 319 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 EXOGQ9Y2C4 368 aaKnown RBP12.99□□□□□ -0.33
LIG3-205ENST00000585941 CARD8Q9Y2G2 431 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 ZNF337Q9Y3M9 751 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 TRAV27A0A087WT01 109 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 TMX2-CTNND1H3BSU7 103 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 FLRT2O43155 660 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 PRKNO60260 465 aaPredicted RBP12.99□□□□□ -0.33
LIG3-205ENST00000585941 CSO75390 466 aaKnown RBP12.99□□□□□ -0.33
LIG3-205ENST00000585941 ADRA2AP08913 450 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 ZNF3P17036 446 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 PAICSP22234 425 aaKnown RBP12.99□□□□□ -0.33
LIG3-205ENST00000585941 SLC1A3P43003 542 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 CCR4P51679 360 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 MLLT10P55197 1068 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 FOXK2Q01167 660 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 TSTQ16762 297 aaKnown RBP12.99□□□□□ -0.33
LIG3-205ENST00000585941 TMEM205Q6UW68 189 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 APOOLQ6UXV4 268 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 SHISA6Q6ZSJ9 500 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 ATG4DQ86TL0 474 aaPredicted RBP12.99□□□□□ -0.33
LIG3-205ENST00000585941 SLCO6A1Q86UG4 719 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 PRR22Q8IZ63 422 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 GATSQ8NAP1 163 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 APCDD1LQ8NCL9 501 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 OR5L2Q8NGL0 311 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 OR51A7Q8NH64 312 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 LIPHQ8WWY8 451 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 OPALINQ96PE5 141 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 CRB3Q9BUF7 120 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 NRSN2Q9GZP1 204 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 HINT3Q9NQE9 182 aaKnown RBP12.99□□□□□ -0.33
LIG3-205ENST00000585941 IL20RAQ9UHF4 553 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 GPN3Q9UHW5 284 aaPredicted RBP12.99□□□□□ -0.33
LIG3-205ENST00000585941 PCDHGA3Q9Y5H0 932 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 BDP1A6H8Y1 2624 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 SLC22A31A6NKX4 558 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 PRR23D1E9PI22 279 aaPredicted RBP12.98□□□□□ -0.33
LIG3-205ENST00000585941 OR7A10O76100 309 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 KLK3P07288 261 aaPredicted RBP12.98□□□□□ -0.33
LIG3-205ENST00000585941 PRR23D2P0DMB1 279 aaPredicted RBP12.98□□□□□ -0.33
LIG3-205ENST00000585941 NAGAP17050 411 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 FUT1P19526 365 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 PGCP20142 388 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 WNT4P56705 351 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 PRPS1P60891 318 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 NCS1P62166 190 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 LSM3P62310 102 aaKnown RBP12.98□□□□□ -0.33
LIG3-205ENST00000585941 ANGPT1Q15389 498 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 MRPL14Q6P1L8 145 aaKnown RBP12.98□□□□□ -0.33
LIG3-205ENST00000585941 NIPAL3Q6P499 406 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 PAPD4Q6PIY7 484 aaKnown RBP12.98□□□□□ -0.33
LIG3-205ENST00000585941 THSD4Q6ZMP0 1018 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 PRR23CQ6ZRP0 262 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 MEPCEQ7L2J0 689 aaKnown RBP12.98□□□□□ -0.33
LIG3-205ENST00000585941 CPEB2Q7Z5Q1 589 aaKnown RBP12.98□□□□□ -0.33
LIG3-205ENST00000585941 BMPERQ8N8U9 685 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 ZNF563Q8TA94 476 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 NDNFQ8TB73 568 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 RPL3LQ92901 407 aaKnown RBP12.98□□□□□ -0.33
LIG3-205ENST00000585941 ARSGQ96EG1 525 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 TNFRSF13CQ96RJ3 184 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 SPSB2Q99619 263 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 NDEL1Q9GZM8 345 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 DCSTAMPQ9H295 470 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 MCCC2Q9HCC0 563 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 RXFP3Q9NSD7 469 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 AKAP7Q9P0M2 348 aaPredicted RBP12.98□□□□□ -0.33
LIG3-205ENST00000585941 SEC14L4Q9UDX3 406 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 CLEC2DQ9UHP7 191 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 KLHL21Q9UJP4 597 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 PCDHGB6Q9Y5F9 930 aa12.98□□□□□ -0.33
LIG3-205ENST00000585941 CDC14CA4D256 554 aa12.97□□□□□ -0.33
LIG3-205ENST00000585941 OIP5O43482 229 aa12.97□□□□□ -0.33
LIG3-205ENST00000585941 HCRTR2O43614 444 aa12.97□□□□□ -0.33
LIG3-205ENST00000585941 IDH3BO43837 385 aa12.97□□□□□ -0.33
LIG3-205ENST00000585941 FADS1O60427 444 aa12.97□□□□□ -0.33
LIG3-205ENST00000585941 CDC40O60508 579 aaKnown RBP eCLIP12.97□□□□□ -0.33
LIG3-205ENST00000585941 IGHA1P01876 353 aa12.97□□□□□ -0.33
LIG3-205ENST00000585941 NOS3P29474 1203 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms