RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 JMJD7P0C870 316 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 ATXN8OSP0DMR3 200 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 PIPP12273 146 aaPredicted RBP9.52□□□□□ -0.89
LIG3-203ENST00000585370 CCL4P13236 92 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 ETV5P41161 510 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 PCYT1AP49585 367 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 EFNA3P52797 238 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 NNATQ16517 81 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 ALG10BQ5I7T1 473 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 FOXB2Q5VYV0 432 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 FAAH2Q6GMR7 532 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 PAPD4Q6PIY7 484 aaKnown RBP9.52□□□□□ -0.89
LIG3-203ENST00000585370 Q6ZPB1 254 aaPredicted RBP9.52□□□□□ -0.89
LIG3-203ENST00000585370 NUP54Q7Z3B4 507 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 APCDD1LQ8NCL9 501 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 C9orf43Q8TAL5 461 aaPredicted RBP9.52□□□□□ -0.89
LIG3-203ENST00000585370 RNF217Q8TC41 542 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 PHOSPHO1Q8TCT1 267 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 BRIX1Q8TDN6 353 aaKnown RBP9.52□□□□□ -0.89
LIG3-203ENST00000585370 TMEM255BQ8WV15 326 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 APH1BQ8WW43 257 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 MR1Q95460 341 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 UBE2FQ969M7 185 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 EFHD2Q96C19 240 aaPredicted RBP9.52□□□□□ -0.89
LIG3-203ENST00000585370 TMCO6Q96DC7 493 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 OMA1Q96E52 524 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 FAM46AQ96IP4 442 aaKnown RBP9.52□□□□□ -0.89
LIG3-203ENST00000585370 ADOQ96SZ5 270 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 ZNF426Q9BUY5 554 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 DDA1Q9BW61 102 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 ULBP3Q9BZM4 244 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 B3GNT4Q9C0J1 378 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 CCDC90BQ9GZT6 254 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 RBM38Q9H0Z9 239 aaKnown RBP9.52□□□□□ -0.89
LIG3-203ENST00000585370 FKBP14Q9NWM8 211 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 FOXJ2Q9P0K8 574 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 RSL24D1Q9UHA3 163 aaKnown RBP9.52□□□□□ -0.89
LIG3-203ENST00000585370 ICAM5Q9UMF0 924 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 NTNG1Q9Y2I2 539 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 RPL36Q9Y3U8 105 aaKnown RBP9.52□□□□□ -0.89
LIG3-203ENST00000585370 NPFFR2Q9Y5X5 522 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 CEPT1Q9Y6K0 416 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 CDH10Q9Y6N8 788 aa9.52□□□□□ -0.89
LIG3-203ENST00000585370 A0A087WUJ7 227 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 CCDC160A6NGH7 325 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 ZNF99A8MXY4 864 aaPredicted RBP9.51□□□□□ -0.89
LIG3-203ENST00000585370 C9orf172C9J069 976 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 H3BSA7 217 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 HCN1O60741 890 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 NOL3O60936 208 aaKnown RBP9.51□□□□□ -0.89
LIG3-203ENST00000585370 SEC14L2O76054 403 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 SOX14O95416 240 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 CDK1P06493 297 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 RAB40ALP0C0E4 278 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 LIPCP11150 499 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 IFI30P13284 250 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 BMP7P18075 431 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 ABCD3P28288 659 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 SLC9A3P48764 834 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 TMED10P49755 219 aaKnown RBP9.51□□□□□ -0.89
LIG3-203ENST00000585370 SLC26A5P58743 744 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 EFNB1P98172 346 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 PLAURQ03405 335 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 PMS2P3Q13401 168 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 NCF4Q15080 339 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 EXT1Q16394 746 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 SNAPC1Q16533 368 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 ANKDD1AQ495B1 522 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 TMEM236Q5W0B7 351 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 ZNF620Q6ZNG0 422 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 SHISA6Q6ZSJ9 500 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 STX19Q8N4C7 294 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 POGLUT1Q8NBL1 392 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 OR52L1Q8NGH7 329 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 OR2Y1Q8NGV0 311 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 RORBQ92753 470 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 GGHQ92820 318 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 MUL1Q969V5 352 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 NACC2Q96BF6 587 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 BPIFA2Q96DR5 249 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 GPA33Q99795 319 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 BCL7BQ9BQE9 202 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 COPS4Q9BT78 406 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 TMEM43Q9BTV4 400 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 TSSK6Q9BXA6 273 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 TBL1XR1Q9BZK7 514 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 TVP23BQ9NYZ1 205 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 FLRT3Q9NZU0 649 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 ERVK-18Q9QC07 812 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 PADI1Q9ULC6 663 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 PCDHGA3Q9Y5H0 932 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 COMMD3-BMI1R4GMX3 469 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 FLNCQ14315 2725 aa9.51□□□□□ -0.89
LIG3-203ENST00000585370 UBR5O95071 2799 aaPredicted RBP9.5□□□□□ -0.89
LIG3-203ENST00000585370 A0A1W2PQ72 361 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 EFCAB9A8MZ26 197 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 NDUFB5O43674 189 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 FADS1O60427 444 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 ICOSLGO75144 302 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 CNOT3O75175 753 aaKnown RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms