RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 MYDGFQ969H8 173 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 SLC25A39Q9BZJ4 359 aaPredicted RBP2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 DPH5Q9H2P9 285 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 SMYD3Q9H7B4 428 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 POLE3Q9NRF9 147 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 TREM2Q9NZC2 230 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 SLCO1B1Q9Y6L6 691 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 SF3B1O75533 1304 aaKnown RBP eCLIP2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 CLSPNQ9HAW4 1339 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 G3V4G9 280 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 UFL1O94874 794 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 INSP01308 110 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 IGKV3-11P04433 115 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 IGHV4-34P06331 123 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 NT5EP21589 574 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 HPCAL1P37235 193 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 AP3M2P53677 418 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 PRPS1P60891 318 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 C1orf146Q5VVC0 180 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 GRAMD2AQ8IUY3 354 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 LRRC43Q8N309 656 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 OR10A7Q8NGE5 316 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 OR56B4Q8NH76 319 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 FAM151AQ8WW52 585 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 RSPH1Q8WYR4 309 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 UCN3Q969E3 161 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 IL22RA2Q969J5 263 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 TSGA13Q96PP4 275 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 SPATA16Q9BXB7 569 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 COQ10BQ9H8M1 238 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 MEAF6Q9HAF1 191 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 AIG1Q9NVV5 245 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 ERVW-1Q9UQF0 538 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 KIF3AQ9Y496 699 aa2.91□□□□□ -1.94
SMCHD1-204ENST00000581226 LTBP1Q14766 1721 aa2.9□□□□□ -1.94
SMCHD1-204ENST00000581226 A0A1W2PNV4 684 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 VSTM2BA6NLU5 285 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 RS1O15537 224 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 ZSCAN12O43309 604 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 SMPD2O60906 423 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 NEBLO76041 1014 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 TM7SF2O76062 418 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 LRATO95237 230 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 H2BFMP0C1H6 154 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 TOP1P11387 765 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 ANXA13P27216 316 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 PRDX3P30048 256 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 MDH1P40925 334 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 LEPP41159 167 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 RPS10P46783 165 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 HNRNPA3P51991 378 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 HSPA2P54652 639 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 BIDP55957 195 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 TRIM16LQ309B1 348 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 USH1GQ495M9 461 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 HSP90AA5PQ58FG0 334 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 NCR3LG1Q68D85 454 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 CYB5R2Q6BCY4 276 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 FAM71F2Q6NXP2 309 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 DHRSXQ8N5I4 330 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 CLDN19Q8N6F1 224 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 ARIH2OSQ8N7S6 290 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 ATP6V0D2Q8N8Y2 350 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 STXBP6Q8NFX7 210 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 OR10T2Q8NGX3 314 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 RAET1EQ8TD07 263 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 SPRYD4Q8WW59 207 aaPredicted RBP2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 RPUSD4Q96CM3 377 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 RIT2Q99578 217 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 TMEM117Q9H0C3 514 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 RHBGQ9H310 441 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 SLC25A22Q9H936 323 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 NUDT15Q9NV35 164 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 TBK1Q9UHD2 729 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 PHF11Q9UIL8 331 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 KLK12Q9UKR0 248 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 PRPF19Q9UMS4 504 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 ASF1AQ9Y294 204 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 ATP6V0A2Q9Y487 856 aa2.9□□□□□ -1.95
SMCHD1-204ENST00000581226 NPIPA7E9PJI5 369 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 PPIAL4DF5H284 164 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 GFYI3L273 518 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 IFNB1P01574 187 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 RBMY1CP0DJD4 496 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 NPIPA8P0DM63 369 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 POLR2EP19388 210 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 CCNCP24863 283 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 FGF9P31371 208 aaPredicted RBP2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 YWHABP31946 246 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 HSD17B7P56937 341 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 UNC119Q13432 240 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 FAM71E2Q8N5Q1 922 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 BLOC1S5Q8TDH9 187 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 SRSF12Q8WXF0 261 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 CHCHD10Q8WYQ3 142 aaPredicted RBP2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 ST8SIA1Q92185 356 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 MRPS31Q92665 395 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 TBC1D31Q96DN5 1066 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 SLC35A5Q9BS91 424 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 THUMPD2Q9BTF0 503 aaKnown RBP2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms