RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 OGFRL1Q5TC84 451 aaPredicted RBP9.75□□□□□ -0.85
SS18-213ENST00000579640 ARSKQ6UWY0 536 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 LINC00114Q6XXX2 140 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 Q6ZS92 163 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 RRM2BQ7LG56 351 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 ELOA3Q8NG57 546 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 RNF217Q8TC41 542 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 GIPC3Q8TF64 312 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 KLHDC3Q9BQ90 382 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 ARHGAP9Q9BRR9 750 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 ZNF426Q9BUY5 554 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 SLC19A3Q9BZV2 496 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 GABARAPL1Q9H0R8 117 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 UBQLN3Q9H347 655 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 PRORYQ9H606 182 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 KRCC1Q9NPI7 259 aaPredicted RBP9.75□□□□□ -0.85
SS18-213ENST00000579640 PDP1Q9P0J1 537 aaPredicted RBP9.75□□□□□ -0.85
SS18-213ENST00000579640 VDAC3Q9Y277 283 aa9.75□□□□□ -0.85
SS18-213ENST00000579640 A0A087WUU8 490 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 SH3PXD2BA1X283 911 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 PINLYPA6NC86 204 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 ACOT7O00154 380 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 GLSO94925 669 aaPredicted RBP9.74□□□□□ -0.85
SS18-213ENST00000579640 NTN1O95631 604 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 ZNF17P17021 662 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 HK1P19367 917 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 CXCR1P25024 350 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 FKBP2P26885 142 aaKnown RBP9.74□□□□□ -0.85
SS18-213ENST00000579640 PLGLB1Q02325 96 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 MERTKQ12866 999 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 KCNAB2Q13303 367 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 PODNL1Q6PEZ8 512 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 TTC33Q6PID6 262 aaPredicted RBP9.74□□□□□ -0.85
SS18-213ENST00000579640 C5orf46Q6UWT4 87 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 ZNF730Q6ZMV8 503 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 ZBTB49Q6ZSB9 765 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 MBOAT2Q6ZWT7 520 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 TMEM179BQ7Z7N9 219 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 SLC22A16Q86VW1 577 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 EPHX4Q8IUS5 362 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 NKAIN4Q8IVV8 208 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 GTPBP8Q8N3Z3 284 aaPredicted RBP9.74□□□□□ -0.85
SS18-213ENST00000579640 PACRGLQ8N7B6 248 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 OR10G2Q8NGC3 310 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 TMEM239Q8WW34 195 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 TMEM43Q9BTV4 400 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 TTTY12Q9BZ98 90 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 OR2B2Q9GZK3 357 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 VCXQ9H320 206 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 ZNF703Q9H7S9 590 aaPredicted RBP9.74□□□□□ -0.85
SS18-213ENST00000579640 SERINC1Q9NRX5 453 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 OSGIN1Q9UJX0 560 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 CSAG2Q9Y5P2 127 aa9.74□□□□□ -0.85
SS18-213ENST00000579640 SPIN1Q9Y657 262 aaPredicted RBP9.74□□□□□ -0.85
SS18-213ENST00000579640 ASPMQ8IZT6 3477 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 TMED7-TICAM2A0A0A6YYA0 188 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 OR10H3O60404 316 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 IGF2P01344 180 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 PDGFAP04085 211 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 ANXA8P13928 327 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 GDF1P27539 372 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 ELK4P28324 431 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 PEX2P28328 305 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 PTDSS1P48651 473 aaKnown RBP9.73□□□□□ -0.85
SS18-213ENST00000579640 CD97P48960 835 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 FOXF1Q12946 379 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 PPP1R8Q12972 351 aaKnown RBP9.73□□□□□ -0.85
SS18-213ENST00000579640 INAQ16352 499 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.73□□□□□ -0.85
SS18-213ENST00000579640 RPUSD3Q6P087 351 aaKnown RBP9.73□□□□□ -0.85
SS18-213ENST00000579640 ASB18Q6ZVZ8 466 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.73□□□□□ -0.85
SS18-213ENST00000579640 STK32CQ86UX6 486 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 RBMXL3Q8N7X1 1067 aaKnown RBP9.73□□□□□ -0.85
SS18-213ENST00000579640 OR4K5Q8NGD3 323 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 C9orf43Q8TAL5 461 aaPredicted RBP9.73□□□□□ -0.85
SS18-213ENST00000579640 PIGXQ8TBF5 258 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 TMEM255BQ8WV15 326 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 DNAJC9Q8WXX5 260 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 ZNF524Q96C55 264 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 CIB1Q99828 191 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 RBM4BQ9BQ04 359 aaKnown RBP9.73□□□□□ -0.85
SS18-213ENST00000579640 PIGQQ9BRB3 760 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 RBM4Q9BWF3 364 aaKnown RBP9.73□□□□□ -0.85
SS18-213ENST00000579640 ZMIZ1Q9ULJ6 1067 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 MGAT4BQ9UQ53 548 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 TMED7Q9Y3B3 224 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 MED31Q9Y3C7 131 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 PCNX3Q9H6A9 2034 aa9.73□□□□□ -0.85
SS18-213ENST00000579640 TNRC6AQ8NDV7 1962 aaKnown RBP9.73□□□□□ -0.85
SS18-213ENST00000579640 LINC01387J3KSC0 135 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 ZNF208O43345 1280 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 ZIC3O60481 467 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 RASAL1O95294 804 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 HPRP00739 348 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 HPNP05981 417 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 RFPL3SP0C7P2 107 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 FUT4P22083 530 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 VHLP40337 213 aa9.72□□□□□ -0.85
SS18-213ENST00000579640 SELENBP1Q13228 472 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms