RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 GPR55Q9Y2T6 319 aaPredicted RBP9.29□□□□□ -0.92
SS18-207ENST00000577636 MEMO1Q9Y316 297 aa9.29□□□□□ -0.92
SS18-207ENST00000577636 CLDN16Q9Y5I7 305 aa9.29□□□□□ -0.92
SS18-207ENST00000577636 NUP210LQ5VU65 1888 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 A0A087WXM4 84 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 TRBV4-1A0A0J9YWV2 114 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 FRG2CA6NGY1 282 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 CPSF4LA6NMK7 179 aaKnown RBP9.28□□□□□ -0.92
SS18-207ENST00000577636 HRKO00198 91 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 SCDO00767 359 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 FFAR1O14842 300 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 FMO6PO60774 539 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 MITFO75030 526 aaPredicted RBP9.28□□□□□ -0.92
SS18-207ENST00000577636 CYP7B1O75881 506 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 GNAO1P09471 354 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 ABOP16442 354 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 ENDOUP21128 410 aaKnown RBP9.28□□□□□ -0.92
SS18-207ENST00000577636 RPS4Y1P22090 263 aaKnown RBP9.28□□□□□ -0.92
SS18-207ENST00000577636 EEF1B2P24534 225 aaKnown RBP9.28□□□□□ -0.92
SS18-207ENST00000577636 IL12BP29460 328 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 RYKP34925 604 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 LIMS1P48059 325 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 ART1P52961 327 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 ATP12AP54707 1039 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 NRG3P56975 720 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 COPZ1P61923 177 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 MYBPC1Q00872 1141 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 COX10Q12887 443 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 PCOLCEQ15113 449 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.28□□□□□ -0.92
SS18-207ENST00000577636 BTBD16Q32M84 506 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 KRTAP21-3Q3LHN1 58 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 ENTPD8Q5MY95 495 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 MRPL2Q5T653 305 aaKnown RBP9.28□□□□□ -0.92
SS18-207ENST00000577636 AP1ARQ63HQ0 302 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 ZNF730Q6ZMV8 503 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 TSPYL5Q86VY4 417 aaPredicted RBP9.28□□□□□ -0.92
SS18-207ENST00000577636 ZNF440Q8IYI8 595 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 SHISA5Q8N114 240 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 PARP8Q8N3A8 854 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 OR5L2Q8NGL0 311 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 PIGXQ8TBF5 258 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 RNF217Q8TC41 542 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 CA5BP1Q8WTZ4 195 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 SLC35B4Q969S0 331 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 GTPBP3Q969Y2 492 aaKnown RBP9.28□□□□□ -0.92
SS18-207ENST00000577636 ZG16BQ96DA0 208 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 DHRS1Q96LJ7 313 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 GPR137Q96N19 417 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 LPAR4Q99677 370 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 TEX12Q9BXU0 123 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 GABARAPL3Q9BY60 117 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 TRIM2Q9C040 744 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 IMPAD1Q9NX62 359 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 SCN3BQ9NY72 215 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 RPS6KB2Q9UBS0 482 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 A4GNTQ9UNA3 340 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 PCDHGB6Q9Y5F9 930 aa9.28□□□□□ -0.92
SS18-207ENST00000577636 SH3PXD2BA1X283 911 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 TRAPPC13A5PLN9 417 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 CDHR4A6H8M9 788 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 H3BN98 237 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 MPZL2O60487 215 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 TPST2O60704 377 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 CLIC3O95833 236 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 IGKV3-11P04433 115 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 POU2F1P14859 743 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 CBLP22681 906 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 CLK3P49761 638 aaKnown RBP9.27□□□□□ -0.93
SS18-207ENST00000577636 CDC42P60953 191 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 CSNK2BP67870 215 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 TUBA4AP68366 448 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 RPP38P78345 283 aaKnown RBP9.27□□□□□ -0.93
SS18-207ENST00000577636 HSF1Q00613 529 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 OC90Q02509 493 aaPredicted RBP9.27□□□□□ -0.93
SS18-207ENST00000577636 ZNF141Q15928 474 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 NNATQ16517 81 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 KRTCAP3Q53RY4 240 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 PDZK1Q5T2W1 519 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 ZNF691Q5VV52 312 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 SPINK14Q6IE38 97 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 PODNL1Q6PEZ8 512 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 HSDL2Q6YN16 418 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 ANKRD37Q7Z713 158 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 LACC1Q8IV20 430 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 CDK20Q8IZL9 346 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 BEST3Q8N1M1 668 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 CLIP4Q8N3C7 705 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 OR4K5Q8NGD3 323 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 OR9Q2Q8NGE9 314 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 OR4D11Q8NGI4 311 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 ZNF721Q8TF20 911 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 HDAC2Q92769 488 aaKnown RBP9.27□□□□□ -0.93
SS18-207ENST00000577636 HSPBAP1Q96EW2 488 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 SLC41A3Q96GZ6 507 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 SIGLEC12Q96PQ1 595 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 SPOCK3Q9BQ16 436 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 DGCR6LQ9BY27 220 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 PRRG3Q9BZD7 231 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 GRIP2Q9C0E4 1043 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms