RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 AKIRIN1Q9H9L7 192 aaPredicted RBP3.85□□□□□ -1.79
NUP88-213ENST00000576862 ELL3Q9HB65 397 aaPredicted RBP3.85□□□□□ -1.79
NUP88-213ENST00000576862 CD209Q9NNX6 404 aa3.85□□□□□ -1.79
NUP88-213ENST00000576862 SDHAF3Q9NRP4 125 aa3.85□□□□□ -1.79
NUP88-213ENST00000576862 DNAJC11Q9NVH1 559 aa3.85□□□□□ -1.79
NUP88-213ENST00000576862 EMC3Q9P0I2 261 aa3.85□□□□□ -1.79
NUP88-213ENST00000576862 PRELID1Q9Y255 219 aa3.85□□□□□ -1.79
NUP88-213ENST00000576862 CBY1Q9Y3M2 126 aa3.85□□□□□ -1.79
NUP88-213ENST00000576862 ZNF646O15015 1829 aaPredicted RBP3.85□□□□□ -1.79
NUP88-213ENST00000576862 LOC100506127A0A0U1RQW1 187 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 VPS37CA5D8V6 355 aaPredicted RBP3.84□□□□□ -1.79
NUP88-213ENST00000576862 GOLGA8OA6NCC3 632 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 ARHGAP42A6NI28 874 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 GOLGA8NF8WBI6 632 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 DNALI1O14645 258 aaPredicted RBP3.84□□□□□ -1.79
NUP88-213ENST00000576862 TRIM3O75382 744 aaPredicted RBP3.84□□□□□ -1.79
NUP88-213ENST00000576862 GNA14O95837 355 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 FCER2P06734 321 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 ACP1P24666 158 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 HOXA6P31267 233 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 TRIM23P36406 574 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 MAGEA1P43355 309 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 TNFRSF4P43489 277 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 CDKN1BP46527 198 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 CCNHP51946 323 aaPredicted RBP3.84□□□□□ -1.79
NUP88-213ENST00000576862 KRTAP12-2P59991 146 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 HERV-K104P63124 156 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 TPM4P67936 248 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 NDPQ00604 133 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 MAB21L1Q13394 359 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 CHRNA6Q15825 494 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 Q3ZCU0 254 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 NKAIN1Q4KMZ8 207 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 IFI44LQ53G44 452 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 C1orf186Q6ZWK4 172 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 LRRC70Q7Z2Q7 622 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 GPR142Q7Z601 462 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 ZNF410Q86VK4 478 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 CERS5Q8N5B7 392 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 ZNF565Q8N9K5 539 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 LEMD2Q8NC56 503 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 OR52E1Q8NGJ3 308 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 OR9A1PQ8NGU1 263 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 AKR7LQ8NHP1 331 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 SLC22A8Q8TCC7 542 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 PAQR8Q8TEZ7 354 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 FBXO32Q969P5 355 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 RASD2Q96D21 266 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 PPP1R16AQ96I34 528 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 NSMCE2Q96MF7 247 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 GPA33Q99795 319 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 LLPHQ9BRT6 129 aaKnown RBP3.84□□□□□ -1.79
NUP88-213ENST00000576862 PKIBQ9C010 78 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 DCLRE1BQ9H816 532 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 LY9Q9HBG7 655 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 IL26Q9NPH9 171 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.84□□□□□ -1.79
NUP88-213ENST00000576862 AGPAT3Q9NRZ7 376 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 FARSBQ9NSD9 589 aaKnown RBP3.84□□□□□ -1.79
NUP88-213ENST00000576862 KLHL28Q9NXS3 571 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 SEC14L4Q9UDX3 406 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 ATPIF1Q9UII2 106 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 ATG4BQ9Y4P1 393 aa3.84□□□□□ -1.79
NUP88-213ENST00000576862 LAMB2P55268 1798 aa3.84□□□□□ -1.8
NUP88-213ENST00000576862 NUP98P52948 1817 aa3.84□□□□□ -1.8
NUP88-213ENST00000576862 SPEF2Q9C093 1822 aa3.84□□□□□ -1.8
NUP88-213ENST00000576862 IGHV3OR16-12A0A075B7B8 117 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 CFAP73A6NFT4 308 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 SPECC1L-ADORA2AF8WAN1 911 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 WRBO00258 174 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 PRRG1O14668 218 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 ECI2O75521 394 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 KLHL2O95198 593 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 OAS1P00973 400 aaKnown RBP3.83□□□□□ -1.8
NUP88-213ENST00000576862 ASNSP08243 561 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 CLUP10909 449 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 MBL2P11226 248 aaPredicted RBP3.83□□□□□ -1.8
NUP88-213ENST00000576862 PRPS2P11908 318 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 POU2F1P14859 743 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 CALML3P27482 149 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 PTPN6P29350 595 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 CA8P35219 290 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 BTDP43251 543 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 SUCLG1P53597 346 aaKnown RBP3.83□□□□□ -1.8
NUP88-213ENST00000576862 MFAP2P55001 183 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 PRMT2P55345 433 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 UCP2P55851 309 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 SSTP61278 116 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 B2MP61769 119 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 GFPT1Q06210 699 aaPredicted RBP3.83□□□□□ -1.8
NUP88-213ENST00000576862 TSTA3Q13630 321 aaPredicted RBP3.83□□□□□ -1.8
NUP88-213ENST00000576862 KLF5Q13887 457 aaPredicted RBP3.83□□□□□ -1.8
NUP88-213ENST00000576862 KLHL40Q2TBA0 621 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 NADK2Q4G0N4 442 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 FHL5Q5TD97 284 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 MARC1Q5VT66 337 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 RTL6Q6ICC9 239 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 FAM173BQ6P4H8 233 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 CES3Q6UWW8 571 aa3.83□□□□□ -1.8
NUP88-213ENST00000576862 MOB2Q70IA6 237 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms