RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, human

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-218	ENST00000575207	PRIM2	P49643	509 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	CD69	Q07108	199 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	ZNF154	Q13106	437 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	TRADD	Q15628	312 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	CASC10	Q5T4H9	136 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	MISP	Q8IVT2	679 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	GLB1L3	Q8NCI6	653 aa	Predicted RBP	13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	CEP70	Q8NHQ1	597 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	B4GALNT2	Q8NHY0	566 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	TM4SF18	Q96CE8	201 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	FAIM2	Q9BWQ8	316 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	CHIA	Q9BZP6	476 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	SEC61A2	Q9H9S3	476 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	POPDC3	Q9HBV1	291 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	SLC6A13	Q9NSD5	602 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	GAR1	Q9NY12	217 aa	Known RBP	13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	UPB1	Q9UBR1	384 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	LEF1	Q9UJU2	399 aa	Predicted RBP	13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	PCDHGB5	Q9Y5G0	923 aa		13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	GPC6	Q9Y625	555 aa	Predicted RBP	13.79	□□□□□ -0.2
VPS53-218	ENST00000575207	MDFIC2	A0A1B0GVS7	189 aa		13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	IGKV1D-16	P01601	117 aa		13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	SELENBP1	Q13228	472 aa		13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	GLE1	Q53GS7	698 aa	Known RBP	13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	JAZF1	Q86VZ6	243 aa		13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	ZC3HC1	Q86WB0	502 aa	Known RBP	13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	VSTM4	Q8IW00	320 aa		13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	SAMD14	Q8IZD0	417 aa	Predicted RBP	13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	TEX9	Q8N6V9	391 aa		13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	FAM169B	Q8N8A8	192 aa		13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	B9D2	Q9BPU9	175 aa		13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	MRPL37	Q9BZE1	423 aa	Known RBP	13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	ZNF385D	Q9H6B1	395 aa		13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	MMP26	Q9NRE1	261 aa		13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	SEC14L4	Q9UDX3	406 aa		13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	CMAHP	Q9Y471	501 aa		13.78	□□□□□ -0.2
VPS53-218	ENST00000575207	XPNPEP2	O43895	674 aa		13.77	□□□□□ -0.21
VPS53-218	ENST00000575207	MYZAP	P0CAP1	466 aa		13.77	□□□□□ -0.21
VPS53-218	ENST00000575207	SLC16A1	P53985	500 aa		13.77	□□□□□ -0.21
VPS53-218	ENST00000575207	SEC24C	P53992	1094 aa		13.77	□□□□□ -0.21
VPS53-218	ENST00000575207	OTUD3	Q5T2D3	398 aa	Predicted RBP	13.77	□□□□□ -0.21
VPS53-218	ENST00000575207	FOXB2	Q5VYV0	432 aa		13.77	□□□□□ -0.21
VPS53-218	ENST00000575207	COMMD6	Q7Z4G1	85 aa		13.77	□□□□□ -0.21
VPS53-218	ENST00000575207	MTDH	Q86UE4	582 aa	Known RBP	13.77	□□□□□ -0.21
VPS53-218	ENST00000575207	TMEM86B	Q8N661	226 aa		13.77	□□□□□ -0.21
VPS53-218	ENST00000575207	UBTD2	Q8WUN7	234 aa		13.77	□□□□□ -0.21
VPS53-218	ENST00000575207	BBS4	Q96RK4	519 aa		13.77	□□□□□ -0.21
VPS53-218	ENST00000575207	MOV10	Q9HCE1	1003 aa	Known RBP	13.77	□□□□□ -0.21
VPS53-218	ENST00000575207	ZKSCAN5	Q9Y2L8	839 aa		13.77	□□□□□ -0.21
VPS53-218	ENST00000575207	ANGPTL3	Q9Y5C1	460 aa		13.77	□□□□□ -0.21
VPS53-218	ENST00000575207	OR6C65	A6NJZ3	312 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	TRAF3IP2	O43734	574 aa	Predicted RBP	13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	UGDH	O60701	494 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	FOXH1	O75593	365 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	KCNH1	O95259	989 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	PSMG1	O95456	288 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	PLAT	P00750	562 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	IGKV3-15	P01624	115 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	IGHV4-38-2	P0DP08	117 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	CD1D	P15813	335 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	CDH2	P19022	906 aa	Predicted RBP	13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	ATP6V0D1	P61421	351 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	SLC29A2	Q14542	456 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	MSMP	Q1L6U9	139 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	TBRG1	Q3YBR2	411 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	MMEL1	Q495T6	779 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	TSPO2	Q5TGU0	170 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	FAM9C	Q8IZT9	166 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	METTL4	Q8N3J2	472 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	RAB8B	Q92930	207 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	RBBP8	Q99708	897 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	C3orf14	Q9HBI5	128 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	WIPI2	Q9Y4P8	454 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	ACTL7B	Q9Y614	415 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	PSAT1	Q9Y617	370 aa		13.76	□□□□□ -0.21
VPS53-218	ENST00000575207	DOCK11	Q5JSL3	2073 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207		A0A087WV62	115 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207		H0YL77	283 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	GPR37	O15354	613 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	IPO7	O95373	1038 aa	Known RBP	13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	WISP3	O95389	354 aa	Predicted RBP	13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	H6PD	O95479	791 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	NUDT14	O95848	222 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	ZNF12	P17014	697 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	PRKCA	P17252	672 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	FUT4	P22083	530 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	TYK2	P29597	1187 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	RAD52	P43351	418 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	DIO1	P49895	249 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	DEFB121	Q5J5C9	76 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	ZNF620	Q6ZNG0	422 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	TMPPE	Q6ZT21	453 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	GSPT2	Q8IYD1	628 aa	Known RBP	13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	PARP8	Q8N3A8	854 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	TRIM44	Q96DX7	344 aa	Predicted RBP	13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	OR5B2	Q96R09	309 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	LMF2	Q9BU23	707 aa	Known RBP	13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	TNFRSF19	Q9NS68	423 aa		13.75	□□□□□ -0.21
VPS53-218	ENST00000575207	NUDT4	Q9NZJ9	180 aa		13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms