RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 XKR8Q9H6D3 395 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 MYEF2Q9P2K5 600 aaKnown RBP8.9□□□□□ -0.98
CCDC40-212ENST00000574799 VPS13AQ96RL7 3174 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 A0A1B0GUH1 482 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.9□□□□□ -0.98
CCDC40-212ENST00000574799 SPINT1O43278 529 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 CTSLP07711 333 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 ATP1B2P14415 290 aaPredicted RBP8.9□□□□□ -0.98
CCDC40-212ENST00000574799 KCNJ5P48544 419 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 RAG2P55895 527 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 ST3GAL3Q11203 375 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 LTB4RQ15722 352 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 GAB4Q2WGN9 574 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 PIP5KL1Q5T9C9 394 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 TPRA1Q86W33 373 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 LRRC56Q8IYG6 542 aaPredicted RBP8.9□□□□□ -0.98
CCDC40-212ENST00000574799 CBARPQ8N350 705 aaPredicted RBP8.9□□□□□ -0.98
CCDC40-212ENST00000574799 OTUB2Q96DC9 234 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 SLITRK2Q9H156 845 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 SLC25A18Q9H1K4 315 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 C11orf49Q9H6J7 331 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 STOX2Q9P2F5 926 aaPredicted RBP8.9□□□□□ -0.98
CCDC40-212ENST00000574799 MAFFQ9ULX9 164 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 HS3ST2Q9Y278 367 aa8.9□□□□□ -0.98
CCDC40-212ENST00000574799 COL4A2P08572 1712 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 PLSCR5A0PG75 271 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 NAP1L6A6NFF2 107 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 OTOL1A6NHN0 477 aaPredicted RBP8.9□□□□□ -0.99
CCDC40-212ENST00000574799 TMEM200CA6NKL6 621 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 SULT1C2O00338 296 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 CCL16O15467 120 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 C8AP07357 584 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 TYRP14679 529 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 CENPAP49450 140 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 MMP15P51511 669 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 STXBP1P61764 594 aaKnown RBP8.9□□□□□ -0.99
CCDC40-212ENST00000574799 KRT33BQ14525 404 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 RNLSQ5VYX0 342 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 FCRLBQ6BAA4 426 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 TSSK4Q6SA08 328 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 CRTC1Q6UUV9 634 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 ZNF704Q6ZNC4 412 aaPredicted RBP8.9□□□□□ -0.99
CCDC40-212ENST00000574799 CMIPQ8IY22 773 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 CDK20Q8IZL9 346 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 OR1S1Q8NH92 325 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 SMAP2Q8WU79 429 aaPredicted RBP8.9□□□□□ -0.99
CCDC40-212ENST00000574799 ZFPM2Q8WW38 1151 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 SMPDL3AQ92484 453 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 GHSRQ92847 366 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 KLK6Q92876 244 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 WNT2BQ93097 391 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 MNTQ99583 582 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 CHST8Q9H2A9 424 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 TMEM231Q9H6L2 316 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 BRF2Q9HAW0 419 aa8.9□□□□□ -0.99
CCDC40-212ENST00000574799 ADAM11O75078 769 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 HIST1H2ABP04908 130 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 MYOGP15173 224 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 EDNRAP25101 427 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 LIMS1P48059 325 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 SLC6A12P48065 614 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 EPHB3P54753 998 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 DYRK1AQ13627 763 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 LINC00303Q3SY05 128 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 OLFML2AQ68BL7 652 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 BAIAP2L2Q6UXY1 529 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 FCRLAQ7L513 359 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 HIST3H2AQ7L7L0 130 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 SFTPA1Q8IWL2 248 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 GTPBP8Q8N3Z3 284 aaPredicted RBP8.89□□□□□ -0.99
CCDC40-212ENST00000574799 CYB561A3Q8NBI2 242 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 PAQR8Q8TEZ7 354 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 DUSP19Q8WTR2 217 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 HIST1H2ACQ93077 130 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 SCAMP4Q969E2 229 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 SEMA4CQ9C0C4 833 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 ABRACLQ9P1F3 81 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 PLEKHA6Q9Y2H5 1048 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 DSPPQ9NZW4 1301 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 CACNA1CQ13936 2221 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 A0A087WUU8 490 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 CARNS1A5YM72 827 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 MEIS3P1A6NDR6 274 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 E9PI62 339 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 FADS1O60427 444 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 RBBP9O75884 186 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 SNAPINO95295 136 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 ATP1B1P05026 303 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 CSN2P05814 226 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 NDUFV2P19404 249 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 RAE1P78406 368 aaKnown RBP8.89□□□□□ -0.99
CCDC40-212ENST00000574799 NTHL1P78549 312 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 E2F1Q01094 437 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 POM121L1PQ3SYA9 428 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 CCSMST1Q4G0I0 132 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 ZNF658BQ4V348 819 aaPredicted RBP8.89□□□□□ -0.99
CCDC40-212ENST00000574799 TP53I3Q53FA7 332 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 FAM122BQ7Z309 247 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 PRICKLE2Q7Z3G6 844 aa8.89□□□□□ -0.99
CCDC40-212ENST00000574799 TMEM99Q8N816 258 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms