RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 GPR68Q15743 365 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 NRF1Q16656 503 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 ARHGAP11BQ3KRB8 267 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 HMBOX1Q6NT76 420 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 ZCCHC23Q6ZST2 131 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 C6orf120Q7Z4R8 191 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 ZNF100Q8IYN0 542 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 ZNF433Q8N7K0 673 aaPredicted RBP18.6■□□□□ 0.57
VPS53-216ENST00000574029 TMEM234Q8WY98 164 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 YAE1D1Q9NRH1 226 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 SERINC1Q9NRX5 453 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 ZDHHC2Q9UIJ5 367 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 B3GALT5Q9Y2C3 310 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 IGKV3D-15A0A087WSY6 115 aa18.59■□□□□ 0.57
VPS53-216ENST00000574029 CYP7B1O75881 506 aa18.59■□□□□ 0.57
VPS53-216ENST00000574029 SOAT1P35610 550 aa18.59■□□□□ 0.57
VPS53-216ENST00000574029 CSNK2A1P68400 391 aaPredicted RBP18.59■□□□□ 0.57
VPS53-216ENST00000574029 SYT14P1Q58G82 188 aa18.59■□□□□ 0.57
VPS53-216ENST00000574029 AGAP6Q5VW22 663 aa18.59■□□□□ 0.57
VPS53-216ENST00000574029 ABLIM2Q6H8Q1 611 aa18.59■□□□□ 0.57
VPS53-216ENST00000574029 MTDHQ86UE4 582 aaKnown RBP18.59■□□□□ 0.57
VPS53-216ENST00000574029 RADILQ96JH8 1075 aa18.59■□□□□ 0.57
VPS53-216ENST00000574029 ZNF350Q9GZX5 532 aa18.59■□□□□ 0.57
VPS53-216ENST00000574029 ACER3Q9NUN7 267 aa18.59■□□□□ 0.57
VPS53-216ENST00000574029 CADP27708 2225 aa18.59■□□□□ 0.57
VPS53-216ENST00000574029 SULT2B1O00204 365 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 SKAP2O75563 359 aaPredicted RBP18.58■□□□□ 0.56
VPS53-216ENST00000574029 CSTAP01040 98 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 G6PDP11413 515 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 PGCP20142 388 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 CLDN8P56748 225 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 MERTKQ12866 999 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 FBXW9Q5XUX1 488 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 PODNL1Q6PEZ8 512 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 OLIG3Q7RTU3 272 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 CLECL1Q8IZS7 167 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 FAM71CQ8NEG0 241 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 SLC25A43Q8WUT9 341 aaPredicted RBP18.58■□□□□ 0.56
VPS53-216ENST00000574029 TUBGCP3Q96CW5 907 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 EMC3Q9P0I2 261 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 MKLN1Q9UL63 735 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 ABCA1O95477 2261 aa18.58■□□□□ 0.56
VPS53-216ENST00000574029 COL6A5A8TX70 2615 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 SONP18583 2426 aaKnown RBP18.57■□□□□ 0.56
VPS53-216ENST00000574029 ZNF716A6NP11 495 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 SSX4O60224 188 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 ERLIN1O75477 346 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 GUSBP08236 651 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 UBTFL6P0CB48 400 aaPredicted RBP18.57■□□□□ 0.56
VPS53-216ENST00000574029 PTNP21246 168 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 PGM1P36871 562 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 IRX1P78414 480 aaPredicted RBP18.57■□□□□ 0.56
VPS53-216ENST00000574029 PGS1Q32NB8 556 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 C11orf71Q6IPW1 123 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 EIF3MQ7L2H7 374 aaKnown RBP18.57■□□□□ 0.56
VPS53-216ENST00000574029 CLEC4FQ8N1N0 589 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 MIPOL1Q8TD10 442 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 TCP10LQ8TDR4 215 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 OIT3Q8WWZ8 545 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 SLC35G5Q96KT7 338 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 RHNO1Q9BSD3 238 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 ASIC5Q9NY37 505 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 MGAT4BQ9UQ53 548 aa18.57■□□□□ 0.56
VPS53-216ENST00000574029 IGHV4-30-2A0A087WSY4 118 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 A0A096LNT2 108 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 RNF103-CHMP3A0A140T963 221 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 E7EQL1 145 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 SPAG7O75391 227 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 RAD51DO75771 328 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 IFNA2P01563 188 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 TTKP33981 857 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 APOBEC1P41238 236 aaKnown RBP18.56■□□□□ 0.56
VPS53-216ENST00000574029 EMX2Q04743 252 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 MAD2L1Q13257 205 aaPredicted RBP18.56■□□□□ 0.56
VPS53-216ENST00000574029 MAPK14Q16539 360 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 AP1ARQ63HQ0 302 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 OR4F3Q6IEY1 312 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 TMEM108Q6UXF1 575 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 CROCCP2Q86T23 111 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 OR10H5Q8NGA6 315 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 ADAD1Q96M93 576 aaKnown RBP18.56■□□□□ 0.56
VPS53-216ENST00000574029 CCDC106Q9BWC9 280 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 CBLN4Q9NTU7 201 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 EXD2Q9NVH0 621 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 NOSIPQ9Y314 301 aaKnown RBP18.56■□□□□ 0.56
VPS53-216ENST00000574029 SLC25A15Q9Y619 301 aa18.56■□□□□ 0.56
VPS53-216ENST00000574029 SPIN1Q9Y657 262 aaPredicted RBP18.56■□□□□ 0.56
VPS53-216ENST00000574029 A8MV72 311 aaPredicted RBP18.55■□□□□ 0.56
VPS53-216ENST00000574029 RNASET2O00584 256 aaKnown RBP18.55■□□□□ 0.56
VPS53-216ENST00000574029 KIAA0513O60268 411 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 GPRIN2O60269 458 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 PMS2P2O95744 297 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 IGHV3-9P01782 118 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 PTAFRP25105 342 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 NTF4P34130 210 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 NUDT6P53370 316 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 KRT71Q3SY84 523 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 BEND6Q5SZJ8 279 aaPredicted RBP18.55■□□□□ 0.56
VPS53-216ENST00000574029 TYW3Q6IPR3 259 aaKnown RBP18.55■□□□□ 0.56
VPS53-216ENST00000574029 C16orf62Q7Z3J2 963 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms