RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TIAL1Q01085 375 aaKnown RBP eCLIP3□□□□□ -1.93
VPS35-208ENST00000568612 MC1RQ01726 317 aa3□□□□□ -1.93
VPS35-208ENST00000568612 EMX2Q04743 252 aa3□□□□□ -1.93
VPS35-208ENST00000568612 GABPAQ06546 454 aa3□□□□□ -1.93
VPS35-208ENST00000568612 FABP9Q0Z7S8 132 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SPP2Q13103 211 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SRSF5Q13243 272 aaKnown RBP3□□□□□ -1.93
VPS35-208ENST00000568612 PPIGQ13427 754 aaKnown RBP eCLIP3□□□□□ -1.934e-7■□□□□ 10.9
VPS35-208ENST00000568612 IL18Q14116 193 aa3□□□□□ -1.93
VPS35-208ENST00000568612 TBCEQ15813 527 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 GUK1Q16774 197 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SOWAHAQ2M3V2 549 aa3□□□□□ -1.93
VPS35-208ENST00000568612 HIKESHIQ53FT3 197 aa3□□□□□ -1.93
VPS35-208ENST00000568612 TEX44Q53QW1 395 aa3□□□□□ -1.93
VPS35-208ENST00000568612 AWAT1Q58HT5 328 aa3□□□□□ -1.93
VPS35-208ENST00000568612 PYY3Q5JQD4 70 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SPANXN2Q5MJ10 180 aa3□□□□□ -1.93
VPS35-208ENST00000568612 PRAMEF19Q5SWL8 479 aa3□□□□□ -1.93
VPS35-208ENST00000568612 FNBP1LQ5T0N5 605 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SYT6Q5T7P8 510 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 FAXCQ5TGI0 409 aa3□□□□□ -1.93
VPS35-208ENST00000568612 MARC1Q5VT66 337 aa3□□□□□ -1.93
VPS35-208ENST00000568612 ARL6IP4Q66PJ3 421 aaKnown RBP3□□□□□ -1.93
VPS35-208ENST00000568612 C18orf63Q68DL7 685 aa3□□□□□ -1.93
VPS35-208ENST00000568612 LEMD1Q68G75 181 aa3□□□□□ -1.93
VPS35-208ENST00000568612 TBC1D3GQ6DHY5 549 aa3□□□□□ -1.93
VPS35-208ENST00000568612 ZNF470Q6ECI4 717 aa3□□□□□ -1.93
VPS35-208ENST00000568612 ACAD10Q6JQN1 1059 aa3□□□□□ -1.93
VPS35-208ENST00000568612 AFTPHQ6ULP2 937 aa3□□□□□ -1.93
VPS35-208ENST00000568612 PLET1Q6UQ28 207 aa3□□□□□ -1.93
VPS35-208ENST00000568612 BTNL3Q6UXE8 466 aa3□□□□□ -1.93
VPS35-208ENST00000568612 CASP12Q6UXS9 341 aa3□□□□□ -1.93
VPS35-208ENST00000568612 C1orf186Q6ZWK4 172 aa3□□□□□ -1.93
VPS35-208ENST00000568612 CHST3Q7LGC8 479 aa3□□□□□ -1.93
VPS35-208ENST00000568612 STRADAQ7RTN6 431 aa3□□□□□ -1.93
VPS35-208ENST00000568612 BCDIN3DQ7Z5W3 292 aaKnown RBP3□□□□□ -1.93
VPS35-208ENST00000568612 ADGRA1Q86SQ6 560 aa3□□□□□ -1.93
VPS35-208ENST00000568612 VASH2Q86V25 355 aa3□□□□□ -1.93
VPS35-208ENST00000568612 RANBP3LQ86VV4 465 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 TUSC5Q8IXB3 177 aa3□□□□□ -1.93
VPS35-208ENST00000568612 CFAP206Q8IYR0 622 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SVBPQ8N300 66 aa3□□□□□ -1.93
VPS35-208ENST00000568612 BPIFCQ8NFQ6 507 aa3□□□□□ -1.93
VPS35-208ENST00000568612 OR2M7Q8NG81 312 aa3□□□□□ -1.93
VPS35-208ENST00000568612 OR5T3Q8NGG3 340 aa3□□□□□ -1.93
VPS35-208ENST00000568612 MAFAQ8NHW3 353 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 ZNF596Q8TC21 504 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SPPL2AQ8TCT8 520 aa3□□□□□ -1.93
VPS35-208ENST00000568612 RXFP4Q8TDU9 374 aa3□□□□□ -1.93
VPS35-208ENST00000568612 ACOT11Q8WXI4 607 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 TM9SF4Q92544 642 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SLC38A4Q969I6 547 aa3□□□□□ -1.93
VPS35-208ENST00000568612 C3orf49Q96BT1 292 aa3□□□□□ -1.93
VPS35-208ENST00000568612 FAF2Q96CS3 445 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SMIM12Q96EX1 92 aa3□□□□□ -1.93
VPS35-208ENST00000568612 IGSF21Q96ID5 467 aa3□□□□□ -1.93
VPS35-208ENST00000568612 MSLNLQ96KJ4 702 aa3□□□□□ -1.93
VPS35-208ENST00000568612 PRMT6Q96LA8 375 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 CXorf58Q96LI9 332 aa3□□□□□ -1.93
VPS35-208ENST00000568612 AMDHD1Q96NU7 426 aa3□□□□□ -1.93
VPS35-208ENST00000568612 FOXN4Q96NZ1 517 aa3□□□□□ -1.93
VPS35-208ENST00000568612 NEDD4LQ96PU5 975 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SLC38A2Q96QD8 506 aa3□□□□□ -1.93
VPS35-208ENST00000568612 NODALQ96S42 347 aa3□□□□□ -1.93
VPS35-208ENST00000568612 RNF2Q99496 336 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SDHCQ99643 169 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 PYM1Q9BRP8 204 aaKnown RBP3□□□□□ -1.93
VPS35-208ENST00000568612 LXNQ9BS40 222 aa3□□□□□ -1.93
VPS35-208ENST00000568612 THAP7Q9BT49 309 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 ZNF426Q9BUY5 554 aa3□□□□□ -1.93
VPS35-208ENST00000568612 DDA1Q9BW61 102 aa3□□□□□ -1.93
VPS35-208ENST00000568612 DGCR6LQ9BY27 220 aa3□□□□□ -1.93
VPS35-208ENST00000568612 ANGPTL4Q9BY76 406 aa3□□□□□ -1.93
VPS35-208ENST00000568612 ELOVL4Q9GZR5 314 aa3□□□□□ -1.93
VPS35-208ENST00000568612 EGLN1Q9GZT9 426 aa3□□□□□ -1.93
VPS35-208ENST00000568612 RAB33BQ9H082 229 aa3□□□□□ -1.93
VPS35-208ENST00000568612 COMMD4Q9H0A8 199 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SLITRK2Q9H156 845 aa3□□□□□ -1.93
VPS35-208ENST00000568612 FN3KQ9H479 309 aa3□□□□□ -1.93
VPS35-208ENST00000568612 EPHX3Q9H6B9 360 aa3□□□□□ -1.93
VPS35-208ENST00000568612 PPP1R3EQ9H7J1 279 aa3□□□□□ -1.93
VPS35-208ENST00000568612 FKRPQ9H9S5 495 aa3□□□□□ -1.93
VPS35-208ENST00000568612 LPAR2Q9HBW0 351 aa3□□□□□ -1.93
VPS35-208ENST00000568612 MYNNQ9NPC7 610 aa3□□□□□ -1.93
VPS35-208ENST00000568612 TMEM138Q9NPI0 162 aa3□□□□□ -1.93
VPS35-208ENST00000568612 MKKSQ9NPJ1 570 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 LHX9Q9NQ69 397 aa3□□□□□ -1.93
VPS35-208ENST00000568612 HEYLQ9NQ87 328 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 EIF2B3Q9NR50 452 aaKnown RBP3□□□□□ -1.93
VPS35-208ENST00000568612 ASAH2Q9NR71 780 aa3□□□□□ -1.93
VPS35-208ENST00000568612 MS4A12Q9NXJ0 267 aa3□□□□□ -1.93
VPS35-208ENST00000568612 BARHL2Q9NY43 387 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SCN3BQ9NY72 215 aa3□□□□□ -1.93
VPS35-208ENST00000568612 PLEK2Q9NYT0 353 aa3□□□□□ -1.93
VPS35-208ENST00000568612 CALML5Q9NZT1 146 aa3□□□□□ -1.93
VPS35-208ENST00000568612 GCNT4Q9P109 453 aa3□□□□□ -1.93
VPS35-208ENST00000568612 KLHL13Q9P2N7 655 aa3□□□□□ -1.93
VPS35-208ENST00000568612 PEF1Q9UBV8 284 aaKnown RBP3□□□□□ -1.93
VPS35-208ENST00000568612 STEAP1Q9UHE8 339 aa3□□□□□ -1.93
VPS35-208ENST00000568612 PHF11Q9UIL8 331 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms