RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 MAOBP27338 520 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 PDX1P52945 283 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 RELQ04864 619 aaPredicted RBP12.26□□□□□ -0.45
VPS4A-204ENST00000566354 TRAM1Q15629 374 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 HEPHL1Q6MZM0 1159 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 PLBD1Q6P4A8 553 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 B3GLCTQ6Y288 498 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 ZNF782Q6ZMW2 699 aaPredicted RBP12.26□□□□□ -0.45
VPS4A-204ENST00000566354 ASB18Q6ZVZ8 466 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 FAM109AQ8N4B1 249 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 C9orf62Q8N4C0 152 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 LRRC17Q8N6Y2 441 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 SAMD12Q8N8I0 201 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 OR5H6Q8NGV6 325 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 SLC22A8Q8TCC7 542 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 EDAQ92838 391 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 SGK3Q96BR1 496 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 SLC35A4Q96G79 324 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 SCARF2Q96GP6 870 aaPredicted RBP12.26□□□□□ -0.45
VPS4A-204ENST00000566354 WDR92Q96MX6 357 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 TIMP4Q99727 224 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 MED28Q9H204 178 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 CACYBPQ9HB71 228 aaKnown RBP12.26□□□□□ -0.45
VPS4A-204ENST00000566354 TEKT2Q9UIF3 430 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 HS3ST3A1Q9Y663 406 aa12.26□□□□□ -0.45
VPS4A-204ENST00000566354 ARHGEF17Q96PE2 2063 aaPredicted RBP12.26□□□□□ -0.45
VPS4A-204ENST00000566354 SPAG17Q6Q759 2223 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 DAPL1A0PJW8 107 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 OR6C65A6NJZ3 312 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 CHP2O43745 196 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 LANCL1O43813 399 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 RFPL3O75679 317 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 AGR2O95994 175 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 SFTPCP11686 197 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 BCKDHBP21953 392 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 CERS1P27544 350 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 THBS2P35442 1172 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 RPL6Q02878 288 aaKnown RBP12.25□□□□□ -0.45
VPS4A-204ENST00000566354 GALEQ14376 348 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 FAM205BPQ63HN1 556 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 NIPAL3Q6P499 406 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 OR5W2Q8NH69 310 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 ART5Q96L15 291 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 SARGQ9BW04 601 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 INPP5EQ9NRR6 644 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 SLC7A7Q9UM01 511 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 ZNF443Q9Y2A4 671 aaPredicted RBP12.25□□□□□ -0.45
VPS4A-204ENST00000566354 CACNG2Q9Y698 323 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 C7orf66A4D0T2 115 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 UNC119BA6NIH7 251 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 METTL12A8MUP2 240 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 FABP7O15540 132 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 HRO43593 1189 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 EIF4EP06730 217 aaKnown RBP12.25□□□□□ -0.45
VPS4A-204ENST00000566354 SHC1P29353 583 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 RIPPLY1Q0D2K3 151 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 SCRN3Q0VDG4 424 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 SFXN4Q6P4A7 337 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 FRRS1Q6ZNA5 592 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 OR52L1Q8NGH7 329 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 CCL4L1Q8NHW4 92 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 KAT2AQ92830 837 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 OR2M4Q96R27 311 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 TIMM29Q9BSF4 260 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.25□□□□□ -0.45
VPS4A-204ENST00000566354 OR52D1Q9H346 318 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 RANBP3Q9H6Z4 567 aaPredicted RBP12.25□□□□□ -0.45
VPS4A-204ENST00000566354 B3GNT2Q9NY97 397 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 RASD1Q9Y272 281 aa12.25□□□□□ -0.45
VPS4A-204ENST00000566354 LRP4O75096 1905 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 WDR87Q6ZQQ6 2873 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 PLPP2O43688 288 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 MT-ND5P03915 603 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 ZGLP1P0C6A0 271 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 TFPIP10646 304 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 HOXB3P14651 431 aaPredicted RBP12.24□□□□□ -0.45
VPS4A-204ENST00000566354 AK4P27144 223 aaPredicted RBP12.24□□□□□ -0.45
VPS4A-204ENST00000566354 RAB8AP61006 207 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 YPEL5P62699 121 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 KRT33BQ14525 404 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 FCN2Q15485 313 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 NTRK2Q16620 822 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 ALG11Q2TAA5 492 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 ESCO2Q56NI9 601 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 ZNF542PQ5EBM4 170 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 BCL2L15Q5TBC7 163 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 PYHIN1Q6K0P9 492 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 GPALPP1Q8IXQ4 340 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 SLC16A11Q8NCK7 471 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 SVIPQ8NHG7 77 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 SCMH1Q96GD3 660 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 PPIL3Q9H2H8 161 aaKnown RBP12.24□□□□□ -0.45
VPS4A-204ENST00000566354 SLC6A20Q9NP91 592 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 SLC23A1Q9UHI7 598 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 TMEM5Q9Y2B1 443 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 FANCMQ8IYD8 2048 aa12.24□□□□□ -0.45
VPS4A-204ENST00000566354 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 PRR19A6NJB7 356 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 EEF1E1O43324 174 aaKnown RBP12.23□□□□□ -0.45
VPS4A-204ENST00000566354 PRICKLE3O43900 615 aaPredicted RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms