RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 FITM2Q8N6M3 262 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 OR10Q1Q8NGQ4 319 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 TRIB1Q96RU8 372 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 GPATCH1Q9BRR8 931 aaKnown RBP15.54■□□□□ 0.08
CLN3-217ENST00000565354 TMEM185BQ9H7F4 350 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 SERINC1Q9NRX5 453 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 RLIMQ9NVW2 624 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 NDE1Q9NXR1 346 aa15.54■□□□□ 0.08
CLN3-217ENST00000565354 DNAJC13O75165 2243 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 FBN3Q75N90 2809 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 ELOVL7A1L3X0 281 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 GJE1A6NN92 205 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 M0QX08 132 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 AP3D1O14617 1153 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 GSTA4O15217 222 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 OPN1SWP03999 348 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 GKN3PP0CG01 181 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 ELK4P28324 431 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 GZMMP51124 257 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 CLDN18P56856 261 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 SESN3P58005 492 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 NCALDP61601 193 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 RAC1P63000 192 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 LIPEQ05469 1076 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 EPS8Q12929 822 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 SELENBP1Q13228 472 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 KRT72Q14CN4 511 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 SGCBQ16585 318 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 TMEM44Q2T9K0 475 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 ACSF3Q4G176 576 aaPredicted RBP15.53■□□□□ 0.08
CLN3-217ENST00000565354 PDSS1Q5T2R2 415 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 PPP4R4Q6NUP7 873 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 DHRS4L2Q6PKH6 230 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 CALHM3Q86XJ0 350 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 GRAMD2AQ8IUY3 354 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 SLC15A3Q8IY34 581 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 MICU2Q8IYU8 434 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 CLIP4Q8N3C7 705 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 ATP6V1C2Q8NEY4 427 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 POC1BQ8TC44 478 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 ZNF583Q96ND8 569 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 NPAS1Q99742 590 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 PINK1Q9BXM7 581 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 ACER3Q9NUN7 267 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 CMTM6Q9NX76 183 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 ADA2Q9NZK5 511 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 SPIN1Q9Y657 262 aaPredicted RBP15.53■□□□□ 0.08
CLN3-217ENST00000565354 PCNX3Q9H6A9 2034 aa15.53■□□□□ 0.08
CLN3-217ENST00000565354 EIF1AYO14602 144 aaKnown RBP15.52■□□□□ 0.08
CLN3-217ENST00000565354 IFNA14P01570 189 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 OPN1LWP04000 364 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 SFTPDP35247 375 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 PCBP3P57721 371 aaKnown RBP15.52■□□□□ 0.08
CLN3-217ENST00000565354 PMPCAQ10713 525 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 C16orf89Q6UX73 402 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 GRINAQ7Z429 371 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 P4HA3Q7Z4N8 544 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 LACC1Q8IV20 430 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 LILRA2Q8N149 483 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 CADM2Q8N3J6 435 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 RPRMLQ8N4K4 120 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 SMYD1Q8NB12 490 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 ZPLD1Q8TCW7 415 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 RASSF5Q8WWW0 418 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 RND1Q92730 232 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 NSL1Q96IY1 281 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 TUBA1CQ9BQE3 449 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 ALG2Q9H553 416 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 SPAG4Q9NPE6 437 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 USP22Q9UPT9 525 aa15.52■□□□□ 0.08
CLN3-217ENST00000565354 DNHD1Q96M86 4753 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 NME4O00746 187 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 FRS3O43559 492 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 DNAJA2O60884 412 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 MFN2O95140 757 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 DNAJA1P31689 397 aaKnown RBP15.51■□□□□ 0.07
CLN3-217ENST00000565354 APOBEC1P41238 236 aaKnown RBP15.51■□□□□ 0.07
CLN3-217ENST00000565354 HTR3AP46098 478 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 EIF1AXP47813 144 aaKnown RBP15.51■□□□□ 0.07
CLN3-217ENST00000565354 CLDN20P56880 219 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 NUP107P57740 925 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 RGS8P57771 180 aaPredicted RBP15.51■□□□□ 0.07
CLN3-217ENST00000565354 PLAURQ03405 335 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 VEZF1Q14119 521 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 LRRC23Q53EV4 343 aaPredicted RBP15.51■□□□□ 0.07
CLN3-217ENST00000565354 SLC25A53Q5H9E4 307 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 RTL6Q6ICC9 239 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 C3orf33Q6P1S2 294 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 C8orf82Q6P1X6 216 aaPredicted RBP15.51■□□□□ 0.07
CLN3-217ENST00000565354 PLEKHM3Q6ZWE6 761 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 TMEM200AQ86VY9 491 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 TNIP2Q8NFZ5 429 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 KLHL15Q96M94 604 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 KCTD14Q9BQ13 255 aaPredicted RBP15.51■□□□□ 0.07
CLN3-217ENST00000565354 TTYH2Q9BSA4 534 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 EVA1AQ9H8M9 152 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 NPDC1Q9NQX5 325 aaPredicted RBP15.51■□□□□ 0.07
CLN3-217ENST00000565354 RPS6KB2Q9UBS0 482 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 FAM215AQ9Y5M1 114 aa15.51■□□□□ 0.07
CLN3-217ENST00000565354 PHF3Q92576 2039 aaKnown RBP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms