RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	CYB5R1	Q9UHQ9	305 aa		10.27	□□□□□ -0.76
TCF4-222	ENST00000564228	FBXL3	Q9UKT7	428 aa		10.27	□□□□□ -0.76
TCF4-222	ENST00000564228	RASD1	Q9Y272	281 aa		10.27	□□□□□ -0.76
TCF4-222	ENST00000564228	PCDHGA9	Q9Y5G4	932 aa	Known RBP	10.27	□□□□□ -0.76
TCF4-222	ENST00000564228	ZDBF2	Q9HCK1	2354 aa		10.27	□□□□□ -0.76
TCF4-222	ENST00000564228	PLXND1	Q9Y4D7	1925 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228		A0A0C4DFX4	3053 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	THADA	Q6YHU6	1953 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	TMEM202	A6NGA9	273 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	HIST1H2AB	P04908	130 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	IFNGR1	P15260	489 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	CD46	P15529	392 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	ZNF8	P17098	575 aa	Predicted RBP	10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	PRLHR	P49683	370 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	SNTB2	Q13425	540 aa	Known RBP	10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	SLC5A12	Q1EHB4	618 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	MICB	Q29980	383 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	TMEM164	Q5U3C3	297 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	ZC3H14	Q6PJT7	736 aa	Known RBP	10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	SMARCD3	Q6STE5	483 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	ALKAL2	Q6UX46	152 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	DEF8	Q6ZN54	512 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	HIST3H2A	Q7L7L0	130 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	SLC9B2	Q86UD5	537 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	OR1M1	Q8NGA1	313 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	GPR32P1	Q8NGA4	272 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	SLC7A13	Q8TCU3	470 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	GNPDA2	Q8TDQ7	276 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	HIST1H2AC	Q93077	130 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	COX14	Q96I36	57 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	ZNF354B	Q96LW1	612 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	UTP23	Q9BRU9	249 aa	Known RBP	10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	ZNF649	Q9BS31	505 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	TEX101	Q9BY14	249 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	PHPT1	Q9NRX4	125 aa	Predicted RBP	10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	PTGFRN	Q9P2B2	879 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	GPN3	Q9UHW5	284 aa	Predicted RBP	10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	PLCL2	Q9UPR0	1127 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	SLC22A14	Q9Y267	594 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	PRKAB1	Q9Y478	270 aa		10.27	□□□□□ -0.77
TCF4-222	ENST00000564228	NIN	Q8N4C6	2090 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	POM121B	A6NF01	834 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	TRABD2B	A6NFA1	517 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	SNRPGP15	A8MWD9	76 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228		H0Y8X5	98 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	VEGFD	O43915	354 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	SEMA7A	O75326	666 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	ZNF217	O75362	1048 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	IGLV3-19	P01714	112 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	IL5	P05113	134 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	CD3G	P09693	182 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	CD22	P20273	847 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	HNRNPA2B1	P22626	353 aa	Known RBP	10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	MMP11	P24347	488 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	MAPK9	P45984	424 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	CXCL12	P48061	93 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	PNLIPRP1	P54315	467 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	DGCR2	P98153	550 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	SIGLEC14	Q08ET2	396 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	FOXD4	Q12950	439 aa	Predicted RBP	10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	ZSWIM7	Q19AV6	140 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	SYTL3	Q4VX76	610 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	C1orf94	Q6P1W5	598 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	ZNF322	Q6U7Q0	402 aa	Predicted RBP	10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	GSG1L	Q6UXU4	331 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	DBX2	Q6ZNG2	339 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228		Q6ZTK2	550 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	BMPER	Q8N8U9	685 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	TEX47	Q8TBZ9	253 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	SPRYD4	Q8WW59	207 aa	Predicted RBP	10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	ASB11	Q8WXH4	323 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	PLEKHA1	Q9HB21	404 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	WSB2	Q9NYS7	404 aa	Predicted RBP	10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	AKAP7	Q9P0M2	348 aa	Predicted RBP	10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	CAMK2A	Q9UQM7	478 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	ENTPD4	Q9Y227	616 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	SLC9A8	Q9Y2E8	581 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	MAP4K5	Q9Y4K4	846 aa		10.26	□□□□□ -0.77
TCF4-222	ENST00000564228	FANCM	Q8IYD8	2048 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	IGHV1OR15-9	A0A0B4J2B8	117 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228		A0A0G2JK05	382 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228		A0A1W2PRB8	838 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	ANKRD61	A6NGH8	418 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	C5orf58	C9J3I9	102 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	PRR23D1	E9PI22	279 aa	Predicted RBP	10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	GNB5	O14775	395 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	UBXN7	O94888	489 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	MT-ND4	P03905	459 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	PRR23D2	P0DMB1	279 aa	Predicted RBP	10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	SAG	P10523	405 aa	Predicted RBP	10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	TYRP1	P17643	537 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	PSMB1	P20618	241 aa	Known RBP	10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	CASP9	P55211	416 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	PFN3	P60673	137 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	RAB8A	P61006	207 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	ZNF763	Q0D2J5	394 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	DDX39B	Q13838	428 aa	Known RBP	10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	SF1	Q15637	639 aa	Known RBP	10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	SFRP5	Q5T4F7	317 aa		10.25	□□□□□ -0.77
TCF4-222	ENST00000564228	KIAA0895L	Q68EN5	471 aa		10.25	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms