RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	SERHL2	Q9H4I8	314 aa		12.54	□□□□□ -0.4
TPM1-223	ENST00000560445	COQ10B	Q9H8M1	238 aa		12.54	□□□□□ -0.4
TPM1-223	ENST00000560445	ARID1A	O14497	2285 aa		12.54	□□□□□ -0.4
TPM1-223	ENST00000560445	SDHD	O14521	159 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	RFXANK	O14593	260 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	EIF1B	O60739	113 aa	Known RBP	12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	SLC22A3	O75751	556 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	ANP32D	O95626	131 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	PMS2P2	O95744	297 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	DBI	P07108	87 aa	Known RBP	12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	NR2F1	P10589	423 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	NID1	P14543	1247 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	PGM1	P36871	562 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	OR3A2	P47893	321 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	DIO1	P49895	249 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	MAGOH	P61326	146 aa	Known RBP	12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	KCNJ10	P78508	379 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	TOMM34	Q15785	309 aa	Predicted RBP	12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	NDUFAF6	Q330K2	333 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	LRRC74B	Q6ZQY2	392 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	ZNF621	Q6ZSS3	439 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	PEX5L	Q8IYB4	626 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	ZNF100	Q8IYN0	542 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	GABRG1	Q8N1C3	465 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	ZNF611	Q8N823	705 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	MGARP	Q8TDB4	240 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	S100PBP	Q96BU1	408 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	DDIT4L	Q96D03	193 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	PLPPR2	Q96GM1	343 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	MARK4	Q96L34	752 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	NPAS1	Q99742	590 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	GSX2	Q9BZM3	304 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	RAD21L1	Q9H4I0	556 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	MTHFD2L	Q9H903	347 aa	Predicted RBP	12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	DLL4	Q9NR61	685 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	PNPO	Q9NVS9	261 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	P2RX2	Q9UBL9	471 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	RNF115	Q9Y4L5	304 aa		12.53	□□□□□ -0.4
TPM1-223	ENST00000560445	ACAN	P16112	2415 aa		12.52	□□□□□ -0.4
TPM1-223	ENST00000560445	AGAP5	A6NIR3	686 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	FAAH	O00519	579 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	HS3ST1	O14792	307 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	SIAH2	O43255	324 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	SNN	O75324	88 aa	Predicted RBP	12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	H6PD	O95479	791 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	CD3E	P07766	207 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	INHBB	P09529	407 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	IL7R	P16871	459 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	SHC1	P29353	583 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	RNF144A	P50876	292 aa	Predicted RBP	12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	CAPRIN1	Q14444	709 aa	Known RBP	12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	ETFDH	Q16134	617 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	PDCD4	Q53EL6	469 aa	Known RBP	12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	FRRS1	Q6ZNA5	592 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	BHLHA15	Q7RTS1	189 aa	Predicted RBP	12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	MTDH	Q86UE4	582 aa	Known RBP	12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	RNF130	Q86XS8	419 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	CLEC4F	Q8N1N0	589 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	WFDC11	Q8NEX6	87 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	PIWIL2	Q8TC59	973 aa	Known RBP	12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	NUDT8	Q8WV74	236 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	WDR60	Q8WVS4	1066 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	RAB8B	Q92930	207 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	ITCH	Q96J02	903 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	PSD2	Q9BQI7	771 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	MANSC1	Q9H8J5	431 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	FAIM	Q9NVQ4	179 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	PARPBP	Q9NWS1	579 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	ZIM2	Q9NZV7	527 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	TRAPPC4	Q9Y296	219 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	GPR45	Q9Y5Y3	372 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	DSCAM	O60469	2012 aa		12.52	□□□□□ -0.41
TPM1-223	ENST00000560445	HEATR5A	Q86XA9	2040 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	IGKV3D-15	A0A087WSY6	115 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445		A0A1W2PNR3	127 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445		A0A1W2PPR1	153 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	HMGN4	O00479	90 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	KLF11	O14901	512 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	SMAD9	O15198	467 aa	Known RBP	12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	ZNF208	O43345	1280 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	KLF4	O43474	513 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	EFNA2	O43921	213 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	GCM2	O75603	506 aa	Predicted RBP	12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	THBD	P07204	575 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	ZCCHC18	P0CG32	403 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	KIT	P10721	976 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	EPHA3	P29320	983 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	RYK	P34925	604 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	POLR2H	P52434	150 aa	Known RBP	12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	CRISP3	P54108	245 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	WDR4	P57081	412 aa	Known RBP	12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	STX1B	P61266	288 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	COPZ1	P61923	177 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	UFM1	P61960	85 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	IRX1	P78414	480 aa	Predicted RBP	12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	LARS2	Q15031	903 aa	Known RBP	12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	LIN52	Q52LA3	116 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	BEND6	Q5SZJ8	279 aa	Predicted RBP	12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	ADAM5	Q6NVV9	412 aa		12.51	□□□□□ -0.41
TPM1-223	ENST00000560445	GTPBP3	Q969Y2	492 aa	Known RBP	12.51	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms