RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 FMO6PO60774 539 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 MT-ND1P03886 318 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 UQCRBP14927 111 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 ADH6P28332 368 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 EIF1P41567 113 aaKnown RBP11.56□□□□□ -0.56
SHMT2-227ENST00000557269 CDH12P55289 794 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 CLDN18P56856 261 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 CLDN20P56880 219 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 COPZ1P61923 177 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 VLDLRP98155 873 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 KCNC4Q03721 635 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 C19orf57Q0VDD7 668 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 MRPL49Q13405 166 aaKnown RBP11.56□□□□□ -0.56
SHMT2-227ENST00000557269 PIN1Q13526 163 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-227ENST00000557269 CCNIQ14094 377 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 EMC4Q5J8M3 183 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 ARHGAP11AQ6P4F7 1023 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 ATG4DQ86TL0 474 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-227ENST00000557269 GGNQ86UU5 652 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 RANBP3LQ86VV4 465 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-227ENST00000557269 ADGRG5Q8IZF4 528 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 ST6GALNAC3Q8NDV1 305 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 ADAMTS16Q8TE57 1224 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 GEMIN6Q8WXD5 167 aaKnown RBP11.56□□□□□ -0.56
SHMT2-227ENST00000557269 SMPDL3BQ92485 455 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 WDYHV1Q96HA8 205 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 LRGUKQ96M69 825 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 TRIM2Q9C040 744 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 EVA1AQ9H8M9 152 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 NDUFAF4Q9P032 175 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 RHCGQ9UBD6 479 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 A4GNTQ9UNA3 340 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 TMED7Q9Y3B3 224 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 ZNF407Q9C0G0 2248 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 SMG1Q96Q15 3661 aaKnown RBP11.56□□□□□ -0.56
SHMT2-227ENST00000557269 COL6A6A6NMZ7 2263 aa11.56□□□□□ -0.56
SHMT2-227ENST00000557269 TCRBV3S1A0A5B6 114 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 EIF4E1BA6NMX2 242 aaKnown RBP11.55□□□□□ -0.56
SHMT2-227ENST00000557269 DIRAS1O95057 198 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 ACTL6AO96019 429 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 IFNW1P05000 195 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 NQO1P15559 274 aaKnown RBP11.55□□□□□ -0.56
SHMT2-227ENST00000557269 ZNF708P17019 499 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 PTNP21246 168 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 PTGS2P35354 604 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 APOBEC1P41238 236 aaKnown RBP11.55□□□□□ -0.56
SHMT2-227ENST00000557269 POLR2HP52434 150 aaKnown RBP11.55□□□□□ -0.56
SHMT2-227ENST00000557269 SRYQ05066 204 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 FOXD4Q12950 439 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-227ENST00000557269 MTX3Q5HYI7 312 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 C1orf146Q5VVC0 180 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 C1QL3Q5VWW1 255 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 AAGABQ6PD74 315 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 WDR88Q6ZMY6 472 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 GDF7Q7Z4P5 450 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 SPATA24Q86W54 205 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 P3H2Q8IVL5 708 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 UBQLNLQ8IYU4 475 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 LILRA2Q8N149 483 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 OR5M9Q8NGP3 310 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 CANT1Q8WVQ1 401 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 DTNBP1Q96EV8 351 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 DNAJA3Q96EY1 480 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 SLC47A1Q96FL8 570 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 OR11A1Q9GZK7 315 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 TMEM27Q9HBJ8 222 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 PNPLA3Q9NST1 481 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 ZNF835Q9Y2P0 537 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 ENPP4Q9Y6X5 453 aa11.55□□□□□ -0.56
SHMT2-227ENST00000557269 IGKV1D-42A0A075B6H8 117 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 A0A0J9YW62 118 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 ZC3H12DA2A288 527 aaKnown RBP11.54□□□□□ -0.56
SHMT2-227ENST00000557269 TRAPPC13A5PLN9 417 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 OR14I1A6ND48 311 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 AQP12BA6NM10 295 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 KDM4EB2RXH2 506 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-227ENST00000557269 PYCARD-AS1I3L0S3 204 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 PRSS23O95084 383 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 STAMBPO95630 424 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 CPN1P15169 458 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 POU3F2P20265 443 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-227ENST00000557269 ELK4P28324 431 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 SFTPDP35247 375 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 HTR3AP46098 478 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 UQCRFS1P47985 274 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 RAC1P63000 192 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 CTU2Q2VPK5 515 aaKnown RBP11.54□□□□□ -0.56
SHMT2-227ENST00000557269 TMEM176BQ3YBM2 270 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-227ENST00000557269 GXYLT1Q4G148 440 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 ALG10BQ5I7T1 473 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 ZNF613Q6PF04 617 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 ULK3Q6PHR2 472 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 PLXDC2Q6UX71 529 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 AQP12AQ8IXF9 295 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 FAM57AQ8TBR7 257 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 SLCO4A1Q96BD0 722 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 SARAFQ96BY9 339 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 SLC41A3Q96GZ6 507 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 ADGRG7Q96K78 797 aa11.54□□□□□ -0.56
SHMT2-227ENST00000557269 ARL5BQ96KC2 179 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms