RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 GSK3AP49840 483 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 CCR4P51679 360 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 GAS1P54826 345 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 SERINC3Q13530 473 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 SLC10A1Q14973 349 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 ELAVL1Q15717 326 aaKnown RBP12.84□□□□□ -0.35
SHMT2-226ENST00000556825 XKR6Q5GH73 641 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 HIST2H3PS2Q5TEC6 136 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 TBC1D3GQ6DHY5 549 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 TSSK4Q6SA08 328 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 GPRIN1Q7Z2K8 1008 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 FAM26EQ8N5C1 309 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 SORCS1Q8WY21 1168 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 PHYHIPQ92561 330 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 MRPS31Q92665 395 aaKnown RBP12.84□□□□□ -0.35
SHMT2-226ENST00000556825 ISOC2Q96AB3 205 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 S100A13Q99584 98 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 DERL2Q9GZP9 239 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 TKTL2Q9H0I9 626 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 TPT1P8Q9HAU6 139 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 ACER3Q9NUN7 267 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 CACFD1Q9UGQ2 172 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 RCE1Q9Y256 329 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 SLC27A6Q9Y2P4 619 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 EXOSC1Q9Y3B2 195 aaKnown RBP12.84□□□□□ -0.35
SHMT2-226ENST00000556825 FAM96BQ9Y3D0 163 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 ELOA3CA0A087WX78 387 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-226ENST00000556825 IRGMA1A4Y4 181 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 IDSB3KWA1 339 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 MAN2B1O00754 1011 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 MATN3O15232 486 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 B4GALT3O60512 393 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 PRPS1L1P21108 318 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 FGF7P21781 194 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 SOX18P35713 384 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 CCR8P51685 355 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 SELENOWP63302 87 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 LMAN2Q12907 356 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 FBXW9Q5XUX1 488 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 GAREM2Q75VX8 874 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 NRROSQ86YC3 692 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 THNSL2Q86YJ6 484 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 FOXRED2Q8IWF2 684 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 ZNF485Q8NCK3 441 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 OR10AD1Q8NGE0 317 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 OR52B4Q8NGK2 314 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 DPH2Q9BQC3 489 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-226ENST00000556825 PLEKHA1Q9HB21 404 aa12.83□□□□□ -0.36
SHMT2-226ENST00000556825 MRPS18AQ9NVS2 196 aaKnown RBP12.83□□□□□ -0.36
SHMT2-226ENST00000556825 MRPL15Q9P015 296 aaKnown RBP12.83□□□□□ -0.36
SHMT2-226ENST00000556825 RNASEK-C17orf49H0YIS7 233 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 NFKBIEO00221 500 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 SYT5O00445 386 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 B4GALT5O43286 388 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 C1QCP02747 245 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 ZNF888P0CJ79 500 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-226ENST00000556825 CHRNA4P43681 627 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 TEAD2Q15562 447 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 SOWAHAQ2M3V2 549 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 ACTBL2Q562R1 376 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 KHDC3LQ587J8 217 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 SLC25A30Q5SVS4 291 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 DNAJB7Q7Z6W7 309 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-226ENST00000556825 SLC30A8Q8IWU4 369 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 ZNF664Q8N3J9 261 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 FAM24BQ8N5W8 94 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 HSD17B11Q8NBQ5 300 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 DUSP19Q8WTR2 217 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 SLC35F5Q8WV83 523 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 ESAMQ96AP7 390 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 ATG4CQ96DT6 458 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 PTCHD1Q96NR3 888 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 MRI1Q9BV20 369 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 TRMT61BQ9BVS5 477 aaKnown RBP12.82□□□□□ -0.36
SHMT2-226ENST00000556825 GLIS2Q9BZE0 524 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-226ENST00000556825 SLC6A16Q9GZN6 736 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 SPHK2Q9NRA0 654 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 MAP4K5Q9Y4K4 846 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 TP53I11O14683 189 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 HYAL3O43820 417 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-226ENST00000556825 GLCEO94923 617 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 EDN1P05305 212 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 HOXC6P09630 235 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 RPS12P25398 132 aaKnown RBP12.82□□□□□ -0.36
SHMT2-226ENST00000556825 DGKEP52429 567 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 TMEM95Q3KNT9 176 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 IFI44LQ53G44 452 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 ZNF805Q5CZA5 627 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 ARSJQ5FYB0 599 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-226ENST00000556825 GDF6Q6KF10 455 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-226ENST00000556825 SFXN4Q6P4A7 337 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 APOOLQ6UXV4 268 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 ZBTB8OSQ8IWT0 167 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 HIST3H2BBQ8N257 126 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 BPIFB2Q8N4F0 458 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 NPRL2Q8WTW4 380 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 EDEM1Q92611 657 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 C5orf34Q96MH7 638 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 MFSD1Q9H3U5 465 aa12.82□□□□□ -0.36
SHMT2-226ENST00000556825 NMNAT1Q9HAN9 279 aaPredicted RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms