RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 BABAM2Q9NXR7 383 aa13.78□□□□□ -0.2
CUX1-215ENST00000556210 ASB4Q9Y574 426 aa13.78□□□□□ -0.2
CUX1-215ENST00000556210 A0A0A6YYD5 115 aa13.78□□□□□ -0.2
CUX1-215ENST00000556210 A0A1W2PPV9 198 aa13.78□□□□□ -0.2
CUX1-215ENST00000556210 C2orf72A6NCS6 295 aa13.78□□□□□ -0.2
CUX1-215ENST00000556210 ST6GAL1P15907 406 aa13.78□□□□□ -0.2
CUX1-215ENST00000556210 F8A1P23610 371 aa13.78□□□□□ -0.2
CUX1-215ENST00000556210 ETV6P41212 452 aa13.78□□□□□ -0.2
CUX1-215ENST00000556210 SRP9P49458 86 aaKnown RBP13.78□□□□□ -0.2
CUX1-215ENST00000556210 KCNAB1Q14722 419 aa13.78□□□□□ -0.2
CUX1-215ENST00000556210 PRAMEF17Q5VTA0 474 aa13.78□□□□□ -0.2
CUX1-215ENST00000556210 ABI3BPQ7Z7G0 1075 aa13.78□□□□□ -0.2
CUX1-215ENST00000556210 COMTD1Q86VU5 262 aa13.78□□□□□ -0.2
CUX1-215ENST00000556210 MCATQ8IVS2 390 aaKnown RBP13.78□□□□□ -0.2
CUX1-215ENST00000556210 IGKV1-8A0A0C4DH67 115 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 FAM25EA8MYX2 175 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 IFNA7P01567 189 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 ARSBP15848 533 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 COL9A1P20849 921 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 GNALP38405 381 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 CTXN1P60606 82 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 DLX2Q07687 328 aaPredicted RBP13.77□□□□□ -0.2
CUX1-215ENST00000556210 ASAH1Q13510 395 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 POU4F3Q15319 338 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 DECR1Q16698 335 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 EOGTQ5NDL2 527 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 GID4Q8IVV7 300 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 GCDHQ92947 438 aaPredicted RBP13.77□□□□□ -0.2
CUX1-215ENST00000556210 SLC25A46Q96AG3 418 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 KATNB1Q9BVA0 655 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 KIR3DX1Q9H7L2 352 aa13.77□□□□□ -0.2
CUX1-215ENST00000556210 ELL3Q9HB65 397 aaPredicted RBP13.77□□□□□ -0.2
CUX1-215ENST00000556210 DIMT1Q9UNQ2 313 aaKnown RBP13.77□□□□□ -0.2
CUX1-215ENST00000556210 YBX2Q9Y2T7 364 aaKnown RBP13.77□□□□□ -0.2
CUX1-215ENST00000556210 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.77□□□□□ -0.2
CUX1-215ENST00000556210 A0A1B0GWA3 101 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 SLC22A31A6NKX4 558 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 SOX1O00570 391 aaPredicted RBP13.77□□□□□ -0.21
CUX1-215ENST00000556210 CDC42EP2O14613 210 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 ANXA3P12429 323 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 MAGEB1P43366 347 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 VASPP50552 380 aaPredicted RBP13.77□□□□□ -0.21
CUX1-215ENST00000556210 PCBP4P57723 403 aaKnown RBP13.77□□□□□ -0.21
CUX1-215ENST00000556210 PLK5Q496M5 336 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.77□□□□□ -0.21
CUX1-215ENST00000556210 SHISA5Q8N114 240 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 MED30Q96HR3 178 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 C1QTNF2Q9BXJ5 285 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 DZANK1Q9NVP4 752 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 ADAM29Q9UKF5 820 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 A0A0G2JMP0 313 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 A0A0X1KG70 313 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 H0YC42 278 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 P2RX3P56373 397 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 KIR2DS3Q14952 304 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 Q6ZS52 159 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 RASSF6Q6ZTQ3 369 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 PRSS45Q7RTY3 260 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 OR4M2Q8NGB6 313 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 FAM174AQ8TBP5 190 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 NSMAFQ92636 917 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 GHSRQ92847 366 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 SGTBQ96EQ0 304 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 TEX101Q9BY14 249 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 CHST2Q9Y4C5 530 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 PTPRDP23468 1912 aa13.77□□□□□ -0.21
CUX1-215ENST00000556210 TSPAN11A1L157 253 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 C4orf51C9J302 202 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 FABP7O15540 132 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 DNASE1P24855 282 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 SSTR2P30874 369 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 CLPPQ16740 277 aaPredicted RBP13.76□□□□□ -0.21
CUX1-215ENST00000556210 SLC25A25Q6KCM7 469 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 FBXO42Q6P3S6 717 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 CHST4Q8NCG5 386 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 ZNF248Q8NDW4 579 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 OR4Q3Q8NH05 313 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 NARS2Q96I59 477 aaKnown RBP13.76□□□□□ -0.21
CUX1-215ENST00000556210 RGS9O75916 674 aaPredicted RBP13.76□□□□□ -0.21
CUX1-215ENST00000556210 RRAS2P62070 204 aaPredicted RBP13.76□□□□□ -0.21
CUX1-215ENST00000556210 SNRPGP62308 76 aaKnown RBP13.76□□□□□ -0.21
CUX1-215ENST00000556210 FOXK2Q01167 660 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 NSDHLQ15738 373 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 ARHGAP40Q5TG30 622 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 TMPRSS12Q86WS5 348 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 KDM8Q8N371 416 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 CLDN22Q8N7P3 220 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 JSRP1Q96MG2 331 aaPredicted RBP13.76□□□□□ -0.21
CUX1-215ENST00000556210 GINS4Q9BRT9 223 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 FUZQ9BT04 418 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 TMEM185BQ9H7F4 350 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 FOLH1BQ9HBA9 442 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 GRHPRQ9UBQ7 328 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 ZNF780AO75290 641 aaPredicted RBP13.76□□□□□ -0.21
CUX1-215ENST00000556210 OR7A10O76100 309 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 RAB3BP20337 219 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 MAKP20794 623 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 GZMKP49863 264 aa13.76□□□□□ -0.21
CUX1-215ENST00000556210 TRA2BP62995 288 aaKnown RBP13.76□□□□□ -0.21
CUX1-215ENST00000556210 GALK2Q01415 458 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms