RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 D6RAR5 112 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 OIP5O43482 229 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 FOXD2O60548 495 aaPredicted RBP24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 ALOX12BO75342 701 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 ETV5P41161 510 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 SLC6A8P48029 635 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 SLC9A3P48764 834 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 ENTPD1P49961 510 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 ETV1P50549 477 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 MLLT11Q13015 90 aaPredicted RBP24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 IL11RAQ14626 422 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 FAAH2Q6GMR7 532 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 USP43Q70EL4 1123 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 ATCAYQ86WG3 371 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 CPOQ8IVL8 374 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 ZBTB44Q8NCP5 570 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 TP53INP1Q96A56 240 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 OMA1Q96E52 524 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 GTPBP2Q9BX10 602 aaKnown RBP24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 OSGIN1Q9UJX0 560 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 CARD8Q9Y2G2 431 aa24.12■■□□□ 1.45
CCDC88C-205ENST00000553403 TMEM129A0AVI4 362 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 SAGE2PA6NJ88 616 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 PROB1E7EW31 1015 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 CYC1P08574 325 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 FOXK2Q01167 660 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 DOC2BQ14184 412 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 SSX1Q16384 188 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 NFAM1Q8NET5 270 aaPredicted RBP24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 OR51A7Q8NH64 312 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 RNF31Q96EP0 1072 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 VMP1Q96GC9 406 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 TNFRSF13CQ96RJ3 184 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 OR51E2Q9H255 320 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 DCSTAMPQ9H295 470 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 MCCC2Q9HCC0 563 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 ISYNA1Q9NPH2 558 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 OCIAD1Q9NX40 245 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 PPIEQ9UNP9 301 aaKnown RBP24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 SEC16AO15027 2179 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 FHL1Q13642 323 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 ARMC4Q5T2S8 1044 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 PAQR6Q6TCH4 344 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 ATG4DQ86TL0 474 aaPredicted RBP24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 KBTBD8Q8NFY9 601 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 METTL21AQ8WXB1 218 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 SLC26A1Q9H2B4 701 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 C12orf10Q9HB07 376 aa24.11■■□□□ 1.45
CCDC88C-205ENST00000553403 ALG1L2C9J202 215 aa24.1■■□□□ 1.45
CCDC88C-205ENST00000553403 EIF4E2O60573 245 aaKnown RBP24.1■■□□□ 1.45
CCDC88C-205ENST00000553403 NADKO95544 446 aaPredicted RBP24.1■■□□□ 1.45
CCDC88C-205ENST00000553403 ABCD3P28288 659 aa24.1■■□□□ 1.45
CCDC88C-205ENST00000553403 EMP2P54851 167 aa24.1■■□□□ 1.45
CCDC88C-205ENST00000553403 TMED1Q13445 227 aa24.1■■□□□ 1.45
CCDC88C-205ENST00000553403 ADCK1Q86TW2 530 aa24.1■■□□□ 1.45
CCDC88C-205ENST00000553403 CROCCP3Q8IVE0 287 aa24.1■■□□□ 1.45
CCDC88C-205ENST00000553403 TMCO5AQ8N6Q1 288 aa24.1■■□□□ 1.45
CCDC88C-205ENST00000553403 BBS1Q8NFJ9 593 aa24.1■■□□□ 1.45
CCDC88C-205ENST00000553403 TMEM43Q9BTV4 400 aa24.1■■□□□ 1.45
CCDC88C-205ENST00000553403 JAM3Q9BX67 310 aa24.1■■□□□ 1.45
CCDC88C-205ENST00000553403 CDC14CA4D256 554 aa24.09■■□□□ 1.45
CCDC88C-205ENST00000553403 ELOA3DA6NLF2 546 aaPredicted RBP24.09■■□□□ 1.45
CCDC88C-205ENST00000553403 AGRPO00253 132 aa24.09■■□□□ 1.45
CCDC88C-205ENST00000553403 SP9P0CG40 484 aa24.09■■□□□ 1.45
CCDC88C-205ENST00000553403 WNT4P56705 351 aa24.09■■□□□ 1.45
CCDC88C-205ENST00000553403 RNF4P78317 190 aa24.09■■□□□ 1.45
CCDC88C-205ENST00000553403 ZFP36L1Q07352 338 aaKnown RBP24.09■■□□□ 1.45
CCDC88C-205ENST00000553403 ZNF829Q3KNS6 432 aaPredicted RBP24.09■■□□□ 1.45
CCDC88C-205ENST00000553403 ELOA3BQ3SY89 546 aa24.09■■□□□ 1.45
CCDC88C-205ENST00000553403 NIPAL3Q6P499 406 aa24.09■■□□□ 1.45
CCDC88C-205ENST00000553403 CBLN3Q6UW01 205 aa24.09■■□□□ 1.45
CCDC88C-205ENST00000553403 MEPCEQ7L2J0 689 aaKnown RBP24.09■■□□□ 1.45
CCDC88C-205ENST00000553403 ELOA3Q8NG57 546 aa24.09■■□□□ 1.45
CCDC88C-205ENST00000553403 APMAPQ9HDC9 416 aa24.09■■□□□ 1.45
CCDC88C-205ENST00000553403 SOCS6O14544 535 aa24.08■■□□□ 1.45
CCDC88C-205ENST00000553403 GNB5O14775 395 aa24.08■■□□□ 1.45
CCDC88C-205ENST00000553403 OR7A10O76100 309 aa24.08■■□□□ 1.45
CCDC88C-205ENST00000553403 NDUFB2O95178 105 aa24.08■■□□□ 1.45
CCDC88C-205ENST00000553403 ZNF883P0CG24 379 aa24.08■■□□□ 1.45
CCDC88C-205ENST00000553403 HK1P19367 917 aa24.08■■□□□ 1.45
CCDC88C-205ENST00000553403 PLBD1Q6P4A8 553 aa24.08■■□□□ 1.45
CCDC88C-205ENST00000553403 ARHGAP11AQ6P4F7 1023 aa24.08■■□□□ 1.45
CCDC88C-205ENST00000553403 GDPGP1Q6ZNW5 385 aa24.08■■□□□ 1.45
CCDC88C-205ENST00000553403 LSRQ86X29 649 aaPredicted RBP24.08■■□□□ 1.45
CCDC88C-205ENST00000553403 PSD4Q8NDX1 1056 aa24.08■■□□□ 1.45
CCDC88C-205ENST00000553403 OR9Q1Q8NGQ5 310 aa24.08■■□□□ 1.45
CCDC88C-205ENST00000553403 BORCS5Q969J3 196 aa24.08■■□□□ 1.45
CCDC88C-205ENST00000553403 IGHV3-20A0A0C4DH32 117 aa24.08■■□□□ 1.44
CCDC88C-205ENST00000553403 RIIAD1A6NNX1 92 aa24.08■■□□□ 1.44
CCDC88C-205ENST00000553403 IGHA1P01876 353 aa24.08■■□□□ 1.44
CCDC88C-205ENST00000553403 PEPDP12955 493 aa24.08■■□□□ 1.44
CCDC88C-205ENST00000553403 CCR4P51679 360 aa24.08■■□□□ 1.44
CCDC88C-205ENST00000553403 SLC35F1Q5T1Q4 408 aa24.08■■□□□ 1.44
CCDC88C-205ENST00000553403 AGBL5Q8NDL9 886 aa24.08■■□□□ 1.44
CCDC88C-205ENST00000553403 LRFN5Q96NI6 719 aa24.08■■□□□ 1.44
CCDC88C-205ENST00000553403 CHCHD6Q9BRQ6 235 aa24.08■■□□□ 1.44
CCDC88C-205ENST00000553403 ZBTB20Q9HC78 741 aaPredicted RBP24.08■■□□□ 1.44
CCDC88C-205ENST00000553403 SEC14L4Q9UDX3 406 aa24.08■■□□□ 1.44
CCDC88C-205ENST00000553403 ZNF337Q9Y3M9 751 aa24.08■■□□□ 1.44
CCDC88C-205ENST00000553403 IGKV1D-42A0A075B6H8 117 aa24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms