RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CA3P07451 260 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 THBS1P07996 1170 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 CD46P15529 392 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 UGT2B7P16662 529 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 ATF1P18846 271 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 CXCL3P19876 107 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 COL9A1P20849 921 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 RPS4Y1P22090 263 aaKnown RBP6.92□□□□□ -1.3
LIMA1-213ENST00000552720 SLC2A5P22732 501 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 PTBP1P26599 531 aaKnown RBP eCLIP6.92□□□□□ -1.3
LIMA1-213ENST00000552720 GDI1P31150 447 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 BMP8BP34820 402 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 TALDO1P37837 337 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 MAGEB1P43366 347 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 LSSP48449 732 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 EMDP50402 254 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 CCR6P51684 374 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 ATP12AP54707 1039 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 GNG2P59768 71 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 PPP1CAP62136 330 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 DGCR2P98153 550 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 MAB21L1Q13394 359 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 FHL1Q13642 323 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 FAM53BQ14153 422 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 NTRK2Q16620 822 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 ACSM3Q53FZ2 586 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 GARNL3Q5VVW2 1013 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 LYPD4Q6UWN0 246 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 BMP8AQ7Z5Y6 402 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 FRMD1Q8N878 549 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 BEST4Q8NFU0 473 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 OR7G1Q8NGA0 311 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 NT5CQ8TCD5 201 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 ACOT12Q8WYK0 555 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 FGF14Q92915 247 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 GCDHQ92947 438 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-213ENST00000552720 CREB3L1Q96BA8 519 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 SERINC2Q96SA4 455 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 RBCK1Q9BYM8 510 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 IGFLR1Q9H665 355 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 CACYBPQ9HB71 228 aaKnown RBP6.92□□□□□ -1.3
LIMA1-213ENST00000552720 BEX1Q9HBH7 125 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 EVA1BQ9NVM1 165 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 SLCO1C1Q9NYB5 712 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 C19orf53Q9UNZ5 99 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-213ENST00000552720 MED31Q9Y3C7 131 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 A0A087WV48 116 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 SLC22A31A6NKX4 558 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 SC5DO75845 299 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 ADRB1P08588 477 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 ANKRD34CP0C6C1 535 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 POU3F3P20264 500 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-213ENST00000552720 NPR2P20594 1047 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 NAA10P41227 235 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-213ENST00000552720 BDH1Q02338 343 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 ENPP2Q13822 863 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 SUZ12Q15022 739 aaKnown RBP6.92□□□□□ -1.3
LIMA1-213ENST00000552720 NDUFAF6Q330K2 333 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 AMZ1Q400G9 498 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 EIPR1Q53HC9 387 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 TMEM196Q5HYL7 178 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF776Q68DI1 518 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-213ENST00000552720 ANKRD54Q6NXT1 300 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 TMPRSS11FQ6ZWK6 438 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF761Q86XN6 746 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-213ENST00000552720 PLCZ1Q86YW0 608 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 C9orf62Q8N4C0 152 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 SLC44A3Q8N4M1 653 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 LRRC17Q8N6Y2 441 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 OR11H4Q8NGC9 324 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 OR4K13Q8NH42 304 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 GRPEL2Q8TAA5 225 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 FAM3CQ92520 227 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF559Q9BR84 538 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 GTPBP2Q9BX10 602 aaKnown RBP6.92□□□□□ -1.3
LIMA1-213ENST00000552720 NIPAL2Q9H841 368 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 KRCC1Q9NPI7 259 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-213ENST00000552720 PHF11Q9UIL8 331 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF222Q9UK12 451 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 PILRAQ9UKJ1 303 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 NCKAP1Q9Y2A7 1128 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 PCNX3Q9H6A9 2034 aa6.92□□□□□ -1.3
LIMA1-213ENST00000552720 OR6C74A6NCV1 312 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 OR2W5A6NFC9 320 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 C4orf47A7E2U8 309 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 C5orf67F2Z3F1 127 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 H0YGG7 62 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 HRKO00198 91 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 PSMD9O00233 223 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 MEN1O00255 615 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 ARHGEF9O43307 516 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 PTP4A3O75365 173 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 TRIM3O75382 744 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 RCBTB2O95199 551 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 RASGRP1O95267 797 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 AGR2O95994 175 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 GALP22466 123 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 F8A1P23610 371 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 GIFP27352 417 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 RBMS1P29558 406 aaKnown RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms