RNA–Protein interactions for RNA: ENST00000552301.1

PRPF40B-216, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 912 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-216ENST00000552301 NPPAP01160 153 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 CRHP06850 196 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 TFPIP10646 304 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 DRD4P21917 467 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 SHC1P29353 583 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 AQP1P29972 269 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 APOBEC1P41238 236 aaKnown RBP16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 AGFG1P52594 562 aaKnown RBP16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 CARD18P57730 90 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 PLAURQ03405 335 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 EPS8Q12929 822 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 SELPLGQ14242 412 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 CTU2Q2VPK5 515 aaKnown RBP16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 MEX3BQ6ZN04 569 aaKnown RBP16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 MCEMP1Q8IX19 187 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 POU5F2Q8N7G0 328 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 CNEP1R1Q8N9A8 125 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 RP9Q8TA86 221 aaKnown RBP16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 OSTF1Q92882 214 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 CPNE4Q96A23 557 aaPredicted RBP16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 LRRC58Q96CX6 371 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 SLC39A3Q9BRY0 314 aa16.59■□□□□ 0.25
PRPF40B-216ENST00000552301 PRORSD1PA6NEY8 169 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 FAAHO00519 579 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 EFNA2O43921 213 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 SNX3O60493 162 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 GKN3PP0CG01 181 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 PRKAR1BP31321 381 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 UQCRC1P31930 480 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 CPA2P48052 419 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 SIRPAP78324 504 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 TFF3Q07654 80 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 FOXF2Q12947 444 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 MTDHQ86UE4 582 aaKnown RBP16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 SLC30A8Q8IWU4 369 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 CADM2Q8N3J6 435 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 OR8J3Q8NGG0 315 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 OR10A6Q8NH74 314 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 MARVELD3Q96A59 401 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 ZNF524Q96C55 264 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 OR5B2Q96R09 309 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 ECSITQ9BQ95 431 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 PIGMQ9H3S5 423 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 KAT8Q9H7Z6 458 aaKnown RBP16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 CTPS2Q9NRF8 586 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 CHRNA9Q9UGM1 479 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 PACSIN3Q9UKS6 424 aa16.58■□□□□ 0.24
PRPF40B-216ENST00000552301 A0A1W2PNV4 684 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 ADAM11O75078 769 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 AQP8O94778 261 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 SLC1A3P43003 542 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 POLR2HP52434 150 aaKnown RBP16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 DLX5P56178 289 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 SYT14P1Q58G82 188 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 INTS11Q5TA45 600 aaKnown RBP16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 GTF2IRD2BQ6EKJ0 949 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 NANOGP8Q6NSW7 305 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 SERPINA11Q86U17 422 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 GTF2IRD2Q86UP8 949 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 ARMC8Q8IUR7 673 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 CLIP4Q8N3C7 705 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 BHLHE22Q8NFJ8 381 aaPredicted RBP16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 RCN3Q96D15 328 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 CCDC106Q9BWC9 280 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 COQ10BQ9H8M1 238 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 NANOGQ9H9S0 305 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 RNF122Q9H9V4 155 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 NPDC1Q9NQX5 325 aaPredicted RBP16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 KLHL28Q9NXS3 571 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 FOXD3Q9UJU5 478 aaPredicted RBP16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 EMC9Q9Y3B6 208 aa16.57■□□□□ 0.24
PRPF40B-216ENST00000552301 A0A1W2PNR3 127 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 FXYD1O00168 92 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 SMNDC1O75940 238 aaKnown RBP eCLIP16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 COX4I1P13073 169 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 CCNA2P20248 432 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 FKBP2P26885 142 aaKnown RBP16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 TACR3P29371 465 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 PCGF2P35227 344 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 CTBP2P56545 445 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 NCALDP61601 193 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 ADRM1Q16186 407 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 ZNF239Q16600 458 aaKnown RBP16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 RABL3Q5HYI8 236 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 WBP2NLQ6ICG8 309 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 NET1Q7Z628 596 aaPredicted RBP16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 PTOV1Q86YD1 416 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 ZZZ3Q8IYH5 903 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 RNASE6Q93091 150 aaKnown RBP16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 SLC35B4Q969S0 331 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 SPOCK3Q9BQ16 436 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 PRDM4Q9UKN5 801 aa16.56■□□□□ 0.24
PRPF40B-216ENST00000552301 HCFC1P51610 2035 aa16.55■□□□□ 0.24
PRPF40B-216ENST00000552301 TMED7-TICAM2A0A0A6YYA0 188 aa16.55■□□□□ 0.24
PRPF40B-216ENST00000552301 AIM2O14862 343 aa16.55■□□□□ 0.24
PRPF40B-216ENST00000552301 CXCR1P25024 350 aa16.55■□□□□ 0.24
PRPF40B-216ENST00000552301 PEX19P40855 299 aa16.55■□□□□ 0.24
PRPF40B-216ENST00000552301 CSNK2A1P68400 391 aaPredicted RBP16.55■□□□□ 0.24
PRPF40B-216ENST00000552301 FBXL19-AS1Q494R0 122 aa16.55■□□□□ 0.24
PRPF40B-216ENST00000552301 DHRS4L2Q6PKH6 230 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms