RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 FAM76BQ5HYJ3 339 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 KRBOX4Q5JUW0 171 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 RPTNQ6XPR3 784 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 GDPGP1Q6ZNW5 385 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 PRSS58Q8IYP2 241 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 TEX19Q8NA77 164 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 OR52N2Q8NGI0 321 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 OR2I1PQ8NGU4 316 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 SMAP2Q8WU79 429 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 ST8SIA4Q92187 359 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 TFGQ92734 400 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 GCDHQ92947 438 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 NEIL2Q969S2 332 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 ZMYND19Q96E35 227 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 PGAP3Q96FM1 320 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 OR2A14Q96R47 310 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 EPYCQ99645 322 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 DHRS9Q9BPW9 319 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 MFFQ9GZY8 342 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 PIGUQ9H490 435 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 ASF1BQ9NVP2 202 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 WSB2Q9NYS7 404 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 MED31Q9Y3C7 131 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 WDR45Q9Y484 360 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 AP1M2Q9Y6Q5 423 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 GVINP1Q7Z2Y8 2422 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 MTMR11A4FU01 709 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 NPIPB15A6NHN6 443 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 SHISA7A6NL88 538 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF670-ZNF695F2Z2N8 137 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 M0QZQ0 153 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 GABRPO00591 440 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 DSCR3O14972 297 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 SLC19A2O60779 497 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 RBBP9O75884 186 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 PGAM2P15259 253 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF14P17017 642 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 CSNK2A2P19784 350 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 UGT2B10P36537 528 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 S100A10P60903 97 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 PSPHP78330 225 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 OPCMLQ14982 345 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 PON3Q15166 354 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 CNN3Q15417 329 aaKnown RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 XKR7Q5GH72 579 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 TMEM88Q6PEY1 159 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 TMEM107Q6UX40 140 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 UNC5DQ6UXZ4 953 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 CREB3L2Q70SY1 520 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 CHST9Q7L1S5 443 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 YAF2Q8IY57 180 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 BEST3Q8N1M1 668 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 LILRA3Q8N6C8 439 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 SMRP1Q8NCR6 262 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 OR2T33Q8NG76 320 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 OR4K13Q8NH42 304 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 ZFAND1Q8TCF1 268 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 CD300LFQ8TDQ1 290 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 CXorf40AQ8TE69 158 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 C2CD4CQ8TF44 421 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 S100PBPQ96BU1 408 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 SEC22AQ96IW7 307 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF354BQ96LW1 612 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 ADAD1Q96M93 576 aaKnown RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 SFXN2Q96NB2 322 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 LMF1Q96S06 567 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 SEC22CQ9BRL7 303 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF768Q9H5H4 540 aaKnown RBP5.1□□□□□ -1.59
LIMA1-203ENST00000547825 ERVW-1Q9UQF0 538 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 CDH10Q9Y6N8 788 aa5.1□□□□□ -1.59
LIMA1-203ENST00000547825 A0A0B4J203 849 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 ANKRD61A6NGH8 418 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 RFXAPO00287 272 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 QSOX1O00391 747 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 GOSR2O14653 212 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 TAPBPO15533 448 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 NDUFS4O43181 175 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 SGCEO43556 437 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 PRKYO43930 277 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 SCGNO76038 276 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 IL1AP01583 271 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 GALTP07902 379 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 VEGFCP49767 419 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 SP140Q13342 867 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 GAB1Q13480 694 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 TRAM2Q15035 370 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 TCTE1Q5JU00 501 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 FAM27D1Q5T7N8 215 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 PIP5KL1Q5T9C9 394 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 TMPRSS9Q7Z410 1059 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 ABI3BPQ7Z7G0 1075 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 RANBP3LQ86VV4 465 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-203ENST00000547825 NUDT13Q86X67 352 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 CCDC71Q8IV32 467 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-203ENST00000547825 LIX1LQ8IVB5 337 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 HDDC3Q8N4P3 179 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 THAP6Q8TBB0 222 aa5.09□□□□□ -1.59
LIMA1-203ENST00000547825 C16orf78Q8WTQ4 265 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms