RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SCAMP2O15127 329 aaKnown RBP15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 BCKDHAP12694 445 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 NR4A2P43354 598 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 CCT3P49368 545 aaKnown RBP15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 SESN3P58005 492 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 TP53BP2Q13625 1128 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 MST1LQ2TV78 715 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 SYT14P1Q58G82 188 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 MTDHQ86UE4 582 aaKnown RBP15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 DEPDC4Q8N2C3 294 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 ST8SIA1Q92185 356 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 EML4Q9HC35 981 aaKnown RBP15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 OXSMQ9NWU1 459 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 ASB6Q9NWX5 421 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 EMC3Q9P0I2 261 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 FIS1Q9Y3D6 152 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 ATP23Q9Y6H3 246 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 CENPVL1A0A0U1RR11 272 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 PDLIM1O00151 329 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 GLRA3O75311 464 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 LINC00032P0C843 101 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 LAMP1P11279 417 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 APOBEC3AP31941 199 aaPredicted RBP15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 ASMTP46597 345 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 CSNK2A1P68400 391 aaPredicted RBP15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 CHRNB3Q05901 458 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 SWI5Q1ZZU3 235 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 GALNTL6Q49A17 601 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 CFAP157Q5JU67 520 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 LIPMQ5VYY2 423 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 OR7E24Q6IFN5 339 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 R3HCC1LQ7Z5L2 792 aaKnown RBP15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 LSRQ86X29 649 aaPredicted RBP15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 OR56A1Q8NGH5 318 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 OR5D16Q8NGK9 328 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 SORCS2Q96PQ0 1159 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 OR7D2Q96RA2 312 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 SDF2Q99470 211 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 SOX7Q9BT81 388 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 LAT2Q9GZY6 243 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 C12orf65Q9H3J6 166 aaKnown RBP15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 TBK1Q9UHD2 729 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 TMED5Q9Y3A6 229 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 DNAJC15Q9Y5T4 150 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 PMF1-BGLAPU3KQ54 211 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 TENM1Q9UKZ4 2725 aa15.6■□□□□ 0.09
CLSTN3-214ENST00000542663 IGHV4-61A0A0C4DH41 118 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 SERINC4A6NH21 518 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 AZIN1O14977 448 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 RIPK2O43353 540 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 PLIN3O60664 434 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 NEFHP12036 1026 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 APEHP13798 732 aaKnown RBP15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 PDLIM4P50479 330 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 SLC16A1P53985 500 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 PHC1P78364 1004 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 MERTKQ12866 999 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 OR52E4Q8NGH9 312 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 C3orf49Q96BT1 292 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 DNAJA3Q96EY1 480 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 ARL5BQ96KC2 179 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 NMUR2Q9GZQ4 415 aa15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 PSMC3IPQ9P2W1 217 aaPredicted RBP15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 FAF1Q9UNN5 650 aaPredicted RBP15.59■□□□□ 0.09
CLSTN3-214ENST00000542663 ATP6V1G2-DDX39BF2Z307 99 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 NDUFS8O00217 210 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 C6orf47O95873 294 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 PGRP06401 933 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 BMP4P12644 408 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 ZNF141Q15928 474 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 C9orf135Q5VTT2 229 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 KANK2Q63ZY3 851 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 OLIG3Q7RTU3 272 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 CCDC103Q8IW40 242 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 SFXN5Q8TD22 340 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 SLC25A43Q8WUT9 341 aaPredicted RBP15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 OR5P2Q8WZ92 322 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 ARL8AQ96BM9 186 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 FBXO17Q96EF6 278 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 C1orf159Q96HA4 380 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 FOXN4Q96NZ1 517 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 PIMREGQ9BSJ6 248 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 CCDC106Q9BWC9 280 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 SERHL2Q9H4I8 314 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 FKRPQ9H9S5 495 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 SLC17A5Q9NRA2 495 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 SERINC1Q9NRX5 453 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 ACER3Q9NUN7 267 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 GIMAP2Q9UG22 337 aa15.58■□□□□ 0.08
CLSTN3-214ENST00000542663 WIPF1O43516 503 aa15.57■□□□□ 0.08
CLSTN3-214ENST00000542663 FCMRO60667 390 aa15.57■□□□□ 0.08
CLSTN3-214ENST00000542663 MRPL33O75394 65 aaKnown RBP15.57■□□□□ 0.08
CLSTN3-214ENST00000542663 UGT2B17O75795 530 aa15.57■□□□□ 0.08
CLSTN3-214ENST00000542663 CYP7B1O75881 506 aa15.57■□□□□ 0.08
CLSTN3-214ENST00000542663 PMS2P2O95744 297 aa15.57■□□□□ 0.08
CLSTN3-214ENST00000542663 KRT16P08779 473 aa15.57■□□□□ 0.08
CLSTN3-214ENST00000542663 HNF1AP20823 631 aa15.57■□□□□ 0.08
CLSTN3-214ENST00000542663 HPCAL1P37235 193 aa15.57■□□□□ 0.08
CLSTN3-214ENST00000542663 SQLEQ14534 574 aa15.57■□□□□ 0.08
CLSTN3-214ENST00000542663 GPR68Q15743 365 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms