RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 C14orf28Q4W4Y0 310 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 ALG10BQ5I7T1 473 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 DPY19L2P2Q6ZN68 376 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 CAMKK1Q8N5S9 505 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 SLC37A3Q8NCC5 494 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 ATP6V1C2Q8NEY4 427 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 OR4F15Q8NGB8 312 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 PFN4Q8NHR9 129 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 SPRYD4Q8WW59 207 aaPredicted RBP9.09□□□□□ -0.95
SS18-205ENST00000542420 SGTBQ96EQ0 304 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 SHDQ96IW2 340 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 SLC46A1Q96NT5 459 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 UBL7Q96S82 380 aaPredicted RBP9.09□□□□□ -0.95
SS18-205ENST00000542420 MAP3K3Q99759 626 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 KCNS3Q9BQ31 491 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 SOSTQ9BQB4 213 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 NDC1Q9BTX1 674 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 ALG8Q9BVK2 526 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 IFT27Q9BW83 186 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 OR10A5Q9H207 317 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 LMAN1LQ9HAT1 526 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 CSNK1G3Q9Y6M4 447 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 A0A1B0GTQ1 180 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 ZSCAN5BA6NJL1 495 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 GABRPO00591 440 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 SOCS6O14544 535 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 RNF13O43567 381 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 MTRF1O75570 445 aaKnown RBP9.08□□□□□ -0.96
SS18-205ENST00000542420 SERPINA3P01011 423 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 WNT1P04628 370 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 SBK2P0C263 348 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 CT45A8P0DMV1 189 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 CT45A9P0DMV2 189 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 NAGAP17050 411 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 MAZP56270 477 aaKnown RBP9.08□□□□□ -0.96
SS18-205ENST00000542420 NXPH1P58417 271 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 PRPS1P60891 318 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 PPP1CAP62136 330 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 ACTA2P62736 377 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 ACTG2P63267 376 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 KLHL26Q53HC5 615 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 CT45A2Q5DJT8 189 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 FNDC7Q5VTL7 733 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 PLBD1Q6P4A8 553 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 NPSR1Q6W5P4 371 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 GLRX5Q86SX6 157 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 AKAP14Q86UN6 197 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 TMEFF1Q8IYR6 380 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 SIRT6Q8N6T7 355 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 FAM83FQ8NEG4 500 aaPredicted RBP9.08□□□□□ -0.96
SS18-205ENST00000542420 TEAD3Q99594 435 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 C20orf141Q9NUB4 165 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 CHRNA9Q9UGM1 479 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 ADAMTS20P59510 1910 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 C12orf71A8MTZ7 269 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 TGFBR3LH3BV60 316 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 WWP2O00308 870 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 IL33O95760 270 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 DLGAP3O95886 979 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 CH25HO95992 272 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 IGKV1D-16P01601 117 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 NGFRP08138 427 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 SAGP10523 405 aaPredicted RBP9.08□□□□□ -0.96
SS18-205ENST00000542420 PPICP45877 212 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 SLC6A8P48029 635 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 STARD6P59095 220 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 GALK2Q01415 458 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 MRPL28Q13084 256 aaKnown RBP9.08□□□□□ -0.96
SS18-205ENST00000542420 FZD5Q13467 585 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 C1orf61Q13536 156 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 HACD4Q5VWC8 232 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 DGAT2L6Q6ZPD8 337 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 TRILQ7L0X0 811 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 OAFQ86UD1 273 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 MS4A15Q8N5U1 240 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 BCORP1Q8N888 145 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 RCBTB1Q8NDN9 531 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 OR13C2Q8NGS9 318 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 LMX1AQ8TE12 382 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 PEX11GQ96HA9 241 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 IER2Q9BTL4 223 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 MIXL1Q9H2W2 232 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 ERVMER34-1Q9H9K5 563 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 MCCC2Q9HCC0 563 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 IL20RAQ9UHF4 553 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 ZNF337Q9Y3M9 751 aa9.08□□□□□ -0.96
SS18-205ENST00000542420 DAPL1A0PJW8 107 aa9.07□□□□□ -0.96
SS18-205ENST00000542420 FRG2CA6NGY1 282 aa9.07□□□□□ -0.96
SS18-205ENST00000542420 TMEM150CB9EJG8 249 aa9.07□□□□□ -0.96
SS18-205ENST00000542420 GTPBP1O00178 669 aaKnown RBP9.07□□□□□ -0.96
SS18-205ENST00000542420 CASKO14936 926 aa9.07□□□□□ -0.96
SS18-205ENST00000542420 SNPHO15079 494 aa9.07□□□□□ -0.96
SS18-205ENST00000542420 RGS5O15539 181 aa9.07□□□□□ -0.96
SS18-205ENST00000542420 HCRTR1O43613 425 aa9.07□□□□□ -0.96
SS18-205ENST00000542420 CLPSP04118 112 aa9.07□□□□□ -0.96
SS18-205ENST00000542420 OR2T7P0C7T2 308 aa9.07□□□□□ -0.96
SS18-205ENST00000542420 GTF2E2P29084 291 aaKnown RBP9.07□□□□□ -0.96
SS18-205ENST00000542420 GNG2P59768 71 aa9.07□□□□□ -0.96
SS18-205ENST00000542420 RPS4XP62701 263 aaKnown RBP9.07□□□□□ -0.96
SS18-205ENST00000542420 FHL1Q13642 323 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms