RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-210	ENST00000540975	ARNTL2	Q8WYA1	636 aa		3.89	□□□□□ -1.79
YBX3-210	ENST00000540975	TSG101	Q99816	390 aa		3.89	□□□□□ -1.79
YBX3-210	ENST00000540975	LLPH	Q9BRT6	129 aa	Known RBP	3.89	□□□□□ -1.79
YBX3-210	ENST00000540975	XKR8	Q9H6D3	395 aa		3.89	□□□□□ -1.79
YBX3-210	ENST00000540975	RPRD1B	Q9NQG5	326 aa	Known RBP	3.89	□□□□□ -1.79
YBX3-210	ENST00000540975	KCNN3	Q9UGI6	736 aa		3.89	□□□□□ -1.79
YBX3-210	ENST00000540975	PAIP2B	Q9ULR5	123 aa	Known RBP	3.89	□□□□□ -1.79
YBX3-210	ENST00000540975	PYCARD	Q9ULZ3	195 aa		3.89	□□□□□ -1.79
YBX3-210	ENST00000540975	STRAP	Q9Y3F4	350 aa	Known RBP	3.89	□□□□□ -1.79
YBX3-210	ENST00000540975	GMEB1	Q9Y692	573 aa		3.89	□□□□□ -1.79
YBX3-210	ENST00000540975	SHANK2	Q9UPX8	1470 aa		3.89	□□□□□ -1.79
YBX3-210	ENST00000540975	IQGAP2	Q13576	1575 aa		3.89	□□□□□ -1.79
YBX3-210	ENST00000540975	GRIN2A	Q12879	1464 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975		A0A1B0GUA9	196 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	GOLGA6L7	A0A1B0GV03	622 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	OR6C74	A6NCV1	312 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	SLC9B1P1	A6NJY1	282 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975		H0YIV9	168 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	GOLGA8M	H3BSY2	632 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	NOL3	O60936	208 aa	Known RBP	3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	SCRG1	O75711	98 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	CABYR	O75952	493 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	ANP32D	O95626	131 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	CHRNA1	P02708	482 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	CXCL10	P02778	98 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	GCK	P35557	465 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	LONP1	P36776	959 aa	Known RBP	3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	CBX5	P45973	191 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	ACTR1A	P61163	376 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	KDSR	Q06136	332 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	IDI1	Q13907	227 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	DPYSL3	Q14195	570 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	ELAVL3	Q14576	367 aa	Known RBP	3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	DPYSL2	Q16555	572 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	HADH	Q16836	314 aa	Known RBP	3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	TEX44	Q53QW1	395 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	PDPK2P	Q6A1A2	396 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	CXCL17	Q6UXB2	119 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	COMTD1	Q86VU5	262 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	ERO1B	Q86YB8	467 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	C12orf56	Q8IXR9	622 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	MKX	Q8IYA7	352 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	TTC5	Q8N0Z6	440 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	RNF175	Q8N4F7	328 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	BBS1	Q8NFJ9	593 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	URGCP	Q8TCY9	931 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	KIFAP3	Q92845	792 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	MCHR2	Q969V1	340 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	FAM104A	Q969W3	186 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	ADIPOR1	Q96A54	375 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	TMIGD2	Q96BF3	282 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	CGREF1	Q99674	301 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	TXN2	Q99757	166 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	SIKE1	Q9BRV8	207 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	TBCD	Q9BTW9	1192 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	API5	Q9BZZ5	524 aa	Known RBP	3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	C1orf21	Q9H246	121 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	GORASP2	Q9H8Y8	452 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	UCK1	Q9HA47	277 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	LY9	Q9HBG7	655 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	MYOZ2	Q9NPC6	264 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	FARSB	Q9NSD9	589 aa	Known RBP	3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	TAS2R3	Q9NYW6	316 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	ACTR3B	Q9P1U1	418 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	PSME2	Q9UL46	239 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	ZNF490	Q9ULM2	529 aa	Predicted RBP	3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	LAMC1	P11047	1609 aa		3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	DNMT1	P26358	1616 aa	Known RBP	3.88	□□□□□ -1.79
YBX3-210	ENST00000540975	ABCC5	O15440	1437 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	TRO	Q12816	1431 aa	Predicted RBP	3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	CAMSAP2	Q08AD1	1489 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	IFT140	Q96RY7	1462 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	URB2	Q14146	1524 aa	Known RBP	3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	LOC100653049	A0A140TA62	436 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	OR5K4	A6NMS3	321 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	DHRS7C	A6NNS2	312 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975		H0YL77	283 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	SGK494	L7N484	410 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	PDXK	O00764	312 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	ALOX15B	O15296	676 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	LYPLA1	O75608	230 aa	Predicted RBP	3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	KRT34	O76011	436 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	IFNB1	P01574	187 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	PNMA6A	P0CW24	399 aa	Predicted RBP	3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	EMD	P50402	254 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	OTUD4	Q01804	1114 aa	Known RBP	3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	ZNF45	Q02386	682 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	PLOD1	Q02809	727 aa	Predicted RBP	3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	COTL1	Q14019	142 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	KARS	Q15046	597 aa	Known RBP	3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	USH1G	Q495M9	461 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	ZNF658B	Q4V348	819 aa	Predicted RBP	3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	HSP90AA5P	Q58FG0	334 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	VPS36	Q86VN1	386 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	CDH26	Q8IXH8	852 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	BATF2	Q8N1L9	274 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	BPIFB2	Q8N4F0	458 aa		3.87	□□□□□ -1.79
YBX3-210	ENST00000540975	OR52E1	Q8NGJ3	308 aa		3.87	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms