RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 GPALPP1Q8IXQ4 340 aa12.14□□□□□ -0.47
LDLR-203ENST00000535915 OR4N2Q8NGD1 307 aa12.14□□□□□ -0.47
LDLR-203ENST00000535915 HMGB4Q8WW32 186 aa12.14□□□□□ -0.47
LDLR-203ENST00000535915 TP53INP1Q96A56 240 aa12.14□□□□□ -0.47
LDLR-203ENST00000535915 TTYH2Q9BSA4 534 aa12.14□□□□□ -0.47
LDLR-203ENST00000535915 ADGRL4Q9HBW9 690 aa12.14□□□□□ -0.47
LDLR-203ENST00000535915 HS3ST3A1Q9Y663 406 aa12.14□□□□□ -0.47
LDLR-203ENST00000535915 GABRG2P18507 467 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 PRKACBP22694 351 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 RABIFP47224 123 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 E2F1Q01094 437 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 CD83Q01151 205 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 SRSF5Q13243 272 aaKnown RBP12.13□□□□□ -0.47
LDLR-203ENST00000535915 RIN1Q13671 783 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 CEP78Q5JTW2 689 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 ZNF57Q68EA5 555 aaPredicted RBP12.13□□□□□ -0.47
LDLR-203ENST00000535915 HBMQ6B0K9 141 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 RTL4Q6ZR62 310 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 CADM2Q8N3J6 435 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 SMPDL3BQ92485 455 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 AHCYL2Q96HN2 611 aaKnown RBP12.13□□□□□ -0.47
LDLR-203ENST00000535915 FYTTD1Q96QD9 318 aaKnown RBP12.13□□□□□ -0.47
LDLR-203ENST00000535915 FOLH1BQ9HBA9 442 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 NLKQ9UBE8 527 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 CLCA3PQ9Y6N3 262 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 MPDZO75970 2070 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 KIR2DS5A0A0G2JLQ3 304 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 A0A0G2JNG1 304 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 KIR2DS3K7RE56 304 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 PLPP2O43688 288 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 NGFRP08138 427 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 PEPDP12955 493 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 ST6GAL1P15907 406 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 SLC2A5P22732 501 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 ACVR1BP36896 505 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 OR12D2P58182 307 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 RACK1P63244 317 aaKnown RBP12.13□□□□□ -0.47
LDLR-203ENST00000535915 ZNF85Q03923 595 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 CRYZQ08257 329 aaKnown RBP12.13□□□□□ -0.47
LDLR-203ENST00000535915 KIR2DS5Q14953 304 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 CCDC85BQ15834 202 aaPredicted RBP12.13□□□□□ -0.47
LDLR-203ENST00000535915 TATDN3Q17R31 274 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 ARMC6Q6NXE6 501 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 IL20RBQ6UXL0 311 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 RPTNQ6XPR3 784 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 CEACAM19Q7Z692 300 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 TRIM2Q9C040 744 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 DNAJB12Q9NXW2 375 aaKnown RBP12.13□□□□□ -0.47
LDLR-203ENST00000535915 MSRAQ9UJ68 235 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 ZMIZ1Q9ULJ6 1067 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 BAIAP2Q9UQB8 552 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 BRWD1Q9NSI6 2320 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 A0A0G2JMP0 313 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 A0A0X1KG70 313 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 OR5K3A6NET4 321 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 OR5K4A6NMS3 321 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 GNB5O14775 395 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 CDC123O75794 336 aaPredicted RBP12.13□□□□□ -0.47
LDLR-203ENST00000535915 IGKV1D-16P01601 117 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 IFI6P09912 130 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 SLC6A6P31641 620 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 MLLT3P42568 568 aaPredicted RBP12.13□□□□□ -0.47
LDLR-203ENST00000535915 ACAA2P42765 397 aaKnown RBP12.13□□□□□ -0.47
LDLR-203ENST00000535915 HHEXQ03014 270 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 C1orf61Q13536 156 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 SF3A2Q15428 464 aaKnown RBP12.13□□□□□ -0.47
LDLR-203ENST00000535915 SLC44A3Q8N4M1 653 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 OR4M2Q8NGB6 313 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 RIT1Q92963 219 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 ZC3HAV1LQ96H79 300 aaKnown RBP12.13□□□□□ -0.47
LDLR-203ENST00000535915 WACQ9BTA9 647 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 TTTY10Q9BZA0 68 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 HDHD2Q9H0R4 259 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 IRF2BPLQ9H1B7 796 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 SYNDIG1Q9H7V2 258 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 KLHL1Q9NR64 748 aa12.13□□□□□ -0.47
LDLR-203ENST00000535915 PRAMEF26H0Y7S4 382 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 HYAL3O43820 417 aaPredicted RBP12.12□□□□□ -0.47
LDLR-203ENST00000535915 IFNGP01579 166 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 CTSEP14091 401 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 TALDO1P37837 337 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 OR10A3P58181 314 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 TAS2R43P59537 309 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 STX4Q12846 297 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 TRAM1Q15629 374 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 ARHGAP11AQ6P4F7 1023 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 PAMR1Q6UXH9 720 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 LRRC28Q86X40 367 aaPredicted RBP12.12□□□□□ -0.47
LDLR-203ENST00000535915 GRAMD2AQ8IUY3 354 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 DTX3Q8N9I9 347 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 DUSP18Q8NEJ0 188 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 C17orf47Q8NEP4 570 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 ABHD4Q8TB40 342 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 RBM18Q96H35 190 aaKnown RBP12.12□□□□□ -0.47
LDLR-203ENST00000535915 ERMAPQ96PL5 475 aaPredicted RBP12.12□□□□□ -0.47
LDLR-203ENST00000535915 LMF2Q9BU23 707 aaKnown RBP12.12□□□□□ -0.47
LDLR-203ENST00000535915 ERVMER34-1Q9H9K5 563 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 MCCC2Q9HCC0 563 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 ENAMQ9NRM1 1142 aa12.12□□□□□ -0.47
LDLR-203ENST00000535915 HCN3Q9P1Z3 774 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms