RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 DAP3P51398 398 aaKnown RBP1.96□□□□□ -2.1
CD44-238ENST00000534296 PRKXP51817 358 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 SELENOTP62341 195 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 RIPK1Q13546 671 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 DPYSL2Q16555 572 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 SYPL1Q16563 259 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 IMMTQ16891 758 aaKnown RBP1.96□□□□□ -2.1
CD44-238ENST00000534296 SLC5A12Q1EHB4 618 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 ZNF571Q7Z3V5 609 aaPredicted RBP1.96□□□□□ -2.1
CD44-238ENST00000534296 SKA3Q8IX90 412 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 GPR137CQ8N3F9 429 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 GMCL1P1Q8NEA9 526 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 BBS1Q8NFJ9 593 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 NANPQ8TBE9 248 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 HTR3CQ8WXA8 447 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 EFHD2Q96C19 240 aaPredicted RBP1.96□□□□□ -2.1
CD44-238ENST00000534296 TRIM44Q96DX7 344 aaPredicted RBP1.96□□□□□ -2.1
CD44-238ENST00000534296 C16orf74Q96GX8 76 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 VSIG2Q96IQ7 327 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 TXN2Q99757 166 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 GAL3ST1Q99999 423 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 RAB34Q9BZG1 259 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 NHEJ1Q9H9Q4 299 aaPredicted RBP1.96□□□□□ -2.1
CD44-238ENST00000534296 SLC17A5Q9NRA2 495 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 MARCH5Q9NX47 278 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 PCSK1NQ9UHG2 260 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 SCML2Q9UQR0 700 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 TRAF3IP3Q9Y228 551 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 ATAD2BQ9ULI0 1458 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 LOC100131303A0A0U1RQF7 123 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 IQANK1A0A1B0GTG1 560 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 HSFX4A0A1B0GTS1 333 aaPredicted RBP1.95□□□□□ -2.1
CD44-238ENST00000534296 HSFX3A0A1B0GWH4 333 aaPredicted RBP1.95□□□□□ -2.1
CD44-238ENST00000534296 TUBAL3A6NHL2 446 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 ZFP92A6NM28 416 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 A8MXQ7 604 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 F5H6K3 240 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 RGS16O15492 202 aaPredicted RBP1.95□□□□□ -2.1
CD44-238ENST00000534296 RS1O15537 224 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 ZNF208O43345 1280 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 OR10H3O60404 316 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 SNAPINO95295 136 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 CA1P00915 261 aaPredicted RBP1.95□□□□□ -2.1
CD44-238ENST00000534296 IGHDP01880 384 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 SEMG1P04279 462 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 HSPB1P04792 205 aaKnown RBP1.95□□□□□ -2.1
CD44-238ENST00000534296 KLK3P07288 261 aaPredicted RBP1.95□□□□□ -2.1
CD44-238ENST00000534296 P0C879 139 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 PNMTP11086 282 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 ZNF44P15621 663 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 ATP6V1B2P21281 511 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 GCAP28676 217 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 CA8P35219 290 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 RFC4P35249 363 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 LEPP41159 167 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 PPT1P50897 306 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 HSD17B7P56937 341 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 RIPK4P57078 832 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 CSNK1G2P78368 415 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 SPIBQ01892 262 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 CNTN2Q02246 1040 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 KLRC3Q07444 240 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 ASPHQ12797 758 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 EIF4EBP2Q13542 120 aaPredicted RBP1.95□□□□□ -2.1
CD44-238ENST00000534296 NSDHLQ15738 373 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 PRR4Q16378 134 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 EXOC3L2Q2M3D2 409 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 ANKDD1AQ495B1 522 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 TPGS2Q68CL5 300 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 GALNT17Q6IS24 598 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 FAM71F2Q6NXP2 309 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 SCARA5Q6ZMJ2 495 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 Q6ZN92 141 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 Q6ZPB1 254 aaPredicted RBP1.95□□□□□ -2.1
CD44-238ENST00000534296 RGS9BPQ6ZS82 235 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 TGIF2LXQ8IUE1 241 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 SLC38A6Q8IZM9 456 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 KIR3DL3Q8N743 410 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 ANKFN1Q8N957 763 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 CCDC54Q8NEL0 328 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 ST8SIA1Q92185 356 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 UCN3Q969E3 161 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 CXorf40BQ96DE9 158 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 IFT74Q96LB3 600 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 NOL4LQ96MY1 436 aaPredicted RBP1.95□□□□□ -2.1
CD44-238ENST00000534296 AMDHD1Q96NU7 426 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 RIOK1Q9BRS2 568 aaKnown RBP1.95□□□□□ -2.1
CD44-238ENST00000534296 ERP44Q9BS26 406 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 CHIAQ9BZP6 476 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 RBKSQ9H477 322 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 NANOGQ9H9S0 305 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 APMAPQ9HDC9 416 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 SH2D2AQ9NP31 389 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 ZNF221Q9UK13 617 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 TMCC3Q9ULS5 477 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 MOKQ9UQ07 419 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 ASF1AQ9Y294 204 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 FRMPD3Q5JV73 1810 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 METP08581 1390 aa1.95□□□□□ -2.1
CD44-238ENST00000534296 KDRP35968 1356 aa1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms