RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 OAFQ86UD1 273 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 SUMF1Q8NBK3 374 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 TNFRSF13CQ96RJ3 184 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 MCCC2Q9HCC0 563 aa18.95■□□□□ 0.62
VPS28-209ENST00000528142 HINT3Q9NQE9 182 aaKnown RBP18.95■□□□□ 0.62
VPS28-209ENST00000528142 IGKV1D-42A0A075B6H8 117 aa18.94■□□□□ 0.62
VPS28-209ENST00000528142 MST1P26927 711 aa18.94■□□□□ 0.62
VPS28-209ENST00000528142 VBP1P61758 197 aa18.94■□□□□ 0.62
VPS28-209ENST00000528142 LSM3P62310 102 aaKnown RBP18.94■□□□□ 0.62
VPS28-209ENST00000528142 DYNC1I2Q13409 638 aaKnown RBP18.94■□□□□ 0.62
VPS28-209ENST00000528142 C3orf38Q5JPI3 329 aa18.94■□□□□ 0.62
VPS28-209ENST00000528142 NXNL2Q5VZ03 156 aa18.94■□□□□ 0.62
VPS28-209ENST00000528142 PAPD4Q6PIY7 484 aaKnown RBP18.94■□□□□ 0.62
VPS28-209ENST00000528142 C19orf48Q6RUI8 117 aa18.94■□□□□ 0.62
VPS28-209ENST00000528142 PROKR2Q8NFJ6 384 aa18.94■□□□□ 0.62
VPS28-209ENST00000528142 SGTBQ96EQ0 304 aa18.94■□□□□ 0.62
VPS28-209ENST00000528142 KLHDC3Q9BQ90 382 aa18.94■□□□□ 0.62
VPS28-209ENST00000528142 SLC19A3Q9BZV2 496 aa18.94■□□□□ 0.62
VPS28-209ENST00000528142 FBXO8Q9NRD0 319 aa18.94■□□□□ 0.62
VPS28-209ENST00000528142 IRGMA1A4Y4 181 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 CSO75390 466 aaKnown RBP18.93■□□□□ 0.62
VPS28-209ENST00000528142 CYC1P08574 325 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 CDK4P11802 303 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 CDH11P55287 796 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 NCS1P62166 190 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 FOXK2Q01167 660 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 ZNF117Q03924 483 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 TCF15Q12870 199 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 RTL4Q6ZR62 310 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 CPEB2Q7Z5Q1 589 aaKnown RBP18.93■□□□□ 0.62
VPS28-209ENST00000528142 MARCH3Q86UD3 253 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 SLC43A2Q8N370 569 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 BBS1Q8NFJ9 593 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 NDNFQ8TB73 568 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 TBC1D15Q8TC07 691 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 RFKQ969G6 155 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 CRB3Q9BUF7 120 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 IFT27Q9BW83 186 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 FN3KQ9H479 309 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 FADS1O60427 444 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 HSMCR30P0CW71 290 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 PNMTP11086 282 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 GADD45AP24522 165 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 HTR1FP30939 366 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 CCR4P51679 360 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 SF3A2Q15428 464 aaKnown RBP18.93■□□□□ 0.62
VPS28-209ENST00000528142 SPHARQ15513 63 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 ZNF362Q5T0B9 420 aaPredicted RBP18.93■□□□□ 0.62
VPS28-209ENST00000528142 PAQR6Q6TCH4 344 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 CPOQ8IVL8 374 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 TMCO5AQ8N6Q1 288 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 PRSS33Q8NF86 280 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 NUBPLQ8TB37 319 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 RHBDD1Q8TEB9 315 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 OPALINQ96PE5 141 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 MND1Q9BWT6 205 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 TAPBPLQ9BX59 468 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 CMC2Q9NRP2 79 aa18.93■□□□□ 0.62
VPS28-209ENST00000528142 ASCC3Q8N3C0 2202 aaKnown RBP18.92■□□□□ 0.62
VPS28-209ENST00000528142 RALGAPA1Q6GYQ0 2036 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 OR6C70A6NIJ9 312 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 FLRT2O43155 660 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 EIF4E2O60573 245 aaKnown RBP18.92■□□□□ 0.62
VPS28-209ENST00000528142 PPM1BO75688 479 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 IGF2P01344 180 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 ETV5P41161 510 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 SLC6A8P48029 635 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 ETV1P50549 477 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 LIMK1P53667 647 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 SLC35F1Q5T1Q4 408 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 CXXC5Q7LFL8 322 aaKnown RBP18.92■□□□□ 0.62
VPS28-209ENST00000528142 VMP1Q96GC9 406 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 LRFN5Q96NI6 719 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 LPAR4Q99677 370 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 WDR54Q9H977 334 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 BAIAP2Q9UQB8 552 aa18.92■□□□□ 0.62
VPS28-209ENST00000528142 HTR3EA5X5Y0 456 aa18.91■□□□□ 0.62
VPS28-209ENST00000528142 TMEM200CA6NKL6 621 aa18.91■□□□□ 0.62
VPS28-209ENST00000528142 ADAM10O14672 748 aa18.91■□□□□ 0.62
VPS28-209ENST00000528142 NDUFB5O43674 189 aa18.91■□□□□ 0.62
VPS28-209ENST00000528142 AIREO43918 545 aa18.91■□□□□ 0.62
VPS28-209ENST00000528142 FOXD2O60548 495 aaPredicted RBP18.91■□□□□ 0.62
VPS28-209ENST00000528142 NUBP1P53384 320 aa18.91■□□□□ 0.62
VPS28-209ENST00000528142 C16orf47Q6ZP98 133 aaPredicted RBP18.91■□□□□ 0.62
VPS28-209ENST00000528142 ATCAYQ86WG3 371 aa18.91■□□□□ 0.62
VPS28-209ENST00000528142 PMEPA1Q969W9 287 aa18.91■□□□□ 0.62
VPS28-209ENST00000528142 TMEM43Q9BTV4 400 aa18.91■□□□□ 0.62
VPS28-209ENST00000528142 TBL1XR1Q9BZK7 514 aa18.91■□□□□ 0.62
VPS28-209ENST00000528142 ADAM19Q9H013 955 aa18.91■□□□□ 0.62
VPS28-209ENST00000528142 RACGAP1Q9H0H5 632 aa18.91■□□□□ 0.62
VPS28-209ENST00000528142 EXOGQ9Y2C4 368 aaKnown RBP18.91■□□□□ 0.62
VPS28-209ENST00000528142 PCDHGA3Q9Y5H0 932 aa18.91■□□□□ 0.62
VPS28-209ENST00000528142 NPFFR2Q9Y5X5 522 aa18.91■□□□□ 0.62
VPS28-209ENST00000528142 FAM183AA6NL82 134 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 ELOA3DA6NLF2 546 aaPredicted RBP18.9■□□□□ 0.62
VPS28-209ENST00000528142 C17orf51A8MQB3 221 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 SOCS6O14544 535 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 HCRTR2O43614 444 aa18.9■□□□□ 0.62
VPS28-209ENST00000528142 ZNF354AO60765 605 aaPredicted RBP18.9■□□□□ 0.62
VPS28-209ENST00000528142 APOL3O95236 402 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms