RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	C4orf17	Q53FE4	359 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	SWT1	Q5T5J6	900 aa	Known RBP	18.7	■□□□□ 0.58
CD44-222	ENST00000526025	MTFR2	Q6P444	385 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	ESPNL	Q6ZVH7	1005 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	ADGRE4P	Q86SQ3	457 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	GGN	Q86UU5	652 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	LILRA2	Q8N149	483 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	FAM156A	Q8NDB6	213 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	OR5M9	Q8NGP3	310 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	PHF10	Q8WUB8	498 aa	Known RBP	18.7	■□□□□ 0.58
CD44-222	ENST00000526025	DNAJA4	Q8WW22	397 aa	Predicted RBP	18.7	■□□□□ 0.58
CD44-222	ENST00000526025	POP5	Q969H6	163 aa	Known RBP	18.7	■□□□□ 0.58
CD44-222	ENST00000526025	ADGRG7	Q96K78	797 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	VKORC1	Q9BQB6	163 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	DCAF13	Q9NV06	445 aa	Known RBP	18.7	■□□□□ 0.58
CD44-222	ENST00000526025	ACTR3B	Q9P1U1	418 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	CHRNA9	Q9UGM1	479 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	TINAG	Q9UJW2	476 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	OSGIN1	Q9UJX0	560 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	SAMD4A	Q9UPU9	718 aa	Known RBP	18.7	■□□□□ 0.58
CD44-222	ENST00000526025	CAMK2A	Q9UQM7	478 aa		18.7	■□□□□ 0.58
CD44-222	ENST00000526025	DIDO1	Q9BTC0	2240 aa	Known RBP	18.7	■□□□□ 0.58
CD44-222	ENST00000526025	TRGV8	A0A0C4DH27	118 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025		H0Y3Z8	333 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025		M0R3H8	397 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	EBAG9	O00559	213 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	ARPC2	O15144	300 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	ZNHIT1	O43257	154 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	ZNF208	O43345	1280 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	DNAJC8	O75937	253 aa	Predicted RBP	18.69	■□□□□ 0.58
CD44-222	ENST00000526025	SERPINA1	P01009	418 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	NCK1	P16333	377 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	HTR2A	P28223	471 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	TACR3	P29371	465 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	RPS3A	P61247	264 aa	Known RBP	18.69	■□□□□ 0.58
CD44-222	ENST00000526025	TRIM25	Q14258	630 aa	Known RBP	18.69	■□□□□ 0.58
CD44-222	ENST00000526025	MTX3	Q5HYI7	312 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	ZNF613	Q6PF04	617 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	ADGRG3	Q86Y34	549 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	OR6T1	Q8NGN1	323 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	PRR7	Q8TB68	274 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	C3orf49	Q96BT1	292 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	KLHL15	Q96M94	604 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	DOCK7	Q96N67	2140 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	THTPA	Q9BU02	230 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	CALHM2	Q9HA72	323 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	TMEM27	Q9HBJ8	222 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	CTPS2	Q9NRF8	586 aa		18.69	■□□□□ 0.58
CD44-222	ENST00000526025	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	18.69	■□□□□ 0.58
CD44-222	ENST00000526025	NCOA6	Q14686	2063 aa	Predicted RBP	18.69	■□□□□ 0.58
CD44-222	ENST00000526025	FLNC	Q14315	2725 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	TMED7-TICAM2	A0A0A6YYA0	188 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	CD8B2	A6NJW9	211 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	TPST2	O60704	377 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	IL11	P20809	199 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	CLDN15	P56746	228 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	CLDN20	P56880	219 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	KCNC4	Q03721	635 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	NPTX1	Q15818	432 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	CTU2	Q2VPK5	515 aa	Known RBP	18.68	■□□□□ 0.58
CD44-222	ENST00000526025	ACSF3	Q4G176	576 aa	Predicted RBP	18.68	■□□□□ 0.58
CD44-222	ENST00000526025	PDSS1	Q5T2R2	415 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	C1orf185	Q5T7R7	199 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	ZNF585A	Q6P3V2	769 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	PGM2L1	Q6PCE3	622 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	ULK3	Q6PHR2	472 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	ATG4D	Q86TL0	474 aa	Predicted RBP	18.68	■□□□□ 0.58
CD44-222	ENST00000526025	CARM1	Q86X55	608 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	CADM2	Q8N3J6	435 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	OR4D11	Q8NGI4	311 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	GEMIN6	Q8WXD5	167 aa	Known RBP	18.68	■□□□□ 0.58
CD44-222	ENST00000526025	ASB9	Q96DX5	294 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	DMRTA2	Q96SC8	542 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	MCHR1	Q99705	422 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	WFDC6	Q9BQY6	131 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	RPS6KB2	Q9UBS0	482 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	MEMO1	Q9Y316	297 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	SH3GLB1	Q9Y371	365 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	TMED7	Q9Y3B3	224 aa		18.68	■□□□□ 0.58
CD44-222	ENST00000526025	FASN	P49327	2511 aa	Known RBP	18.68	■□□□□ 0.58
CD44-222	ENST00000526025	PCNX1	Q96RV3	2341 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025		A0A0B4J2E0	115 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025		A0A1B0GWA3	101 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025		A0A1B0GX12	115 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	ZNF682	O95780	498 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	PNMT	P11086	282 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	SUCLG1	P53597	346 aa	Known RBP	18.67	■□□□□ 0.58
CD44-222	ENST00000526025	HOXC5	Q00444	222 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	OR1Q1	Q15612	314 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	IFI44L	Q53G44	452 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	SYT14P1	Q58G82	188 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	C1QL3	Q5VWW1	255 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	NSUN5P2	Q63ZY6	315 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	RTL6	Q6ICC9	239 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	TMEM211	Q6ICI0	200 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	LCN8	Q6JVE9	175 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	CCDC121	Q6ZUS5	278 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	LACC1	Q8IV20	430 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	OR2V1	Q8NHB1	315 aa		18.67	■□□□□ 0.58
CD44-222	ENST00000526025	SMPDL3B	Q92485	455 aa		18.67	■□□□□ 0.58

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