RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 DIO2Q92813 273 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 CREB3L1Q96BA8 519 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 SAMD11Q96NU1 681 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 VN1R3Q9BXE9 311 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 DHCR7Q9UBM7 475 aaKnown RBP10.9□□□□□ -0.66
SYNPO-204ENST00000519664 SCP2D1Q9UJQ7 156 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 TMEM14AQ9Y6G1 99 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 KANTRA0A1W2PQU2 76 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 KCNJ13O60928 360 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 LILRB3O75022 631 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 OR8G3PP0DMU2 310 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 VASPP50552 380 aaPredicted RBP10.9□□□□□ -0.66
SYNPO-204ENST00000519664 KIAA0040Q15053 153 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 OR52I1Q8NGK6 324 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 ACOT12Q8WYK0 555 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 TANKQ92844 425 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 NRSN2Q9GZP1 204 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 FN3KQ9H479 309 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 PTGES2Q9H7Z7 377 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 EVA1BQ9NVM1 165 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 GLS2Q9UI32 602 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 RPH3AQ9Y2J0 694 aaPredicted RBP10.9□□□□□ -0.66
SYNPO-204ENST00000519664 DOCK1Q14185 1865 aa10.9□□□□□ -0.66
SYNPO-204ENST00000519664 METTL15A6NJ78 407 aa10.9□□□□□ -0.67
SYNPO-204ENST00000519664 PEX12O00623 359 aa10.9□□□□□ -0.67
SYNPO-204ENST00000519664 SLC2A10O95528 541 aa10.9□□□□□ -0.67
SYNPO-204ENST00000519664 MT-ND4P03905 459 aa10.9□□□□□ -0.67
SYNPO-204ENST00000519664 SSTR2P30874 369 aa10.9□□□□□ -0.67
SYNPO-204ENST00000519664 REEP5Q00765 189 aa10.9□□□□□ -0.67
SYNPO-204ENST00000519664 ELOAQ14241 798 aaKnown RBP10.9□□□□□ -0.67
SYNPO-204ENST00000519664 SLX4IPQ5VYV7 408 aa10.9□□□□□ -0.67
SYNPO-204ENST00000519664 SLC35D2Q76EJ3 337 aa10.9□□□□□ -0.67
SYNPO-204ENST00000519664 TECPR1Q7Z6L1 1165 aa10.9□□□□□ -0.67
SYNPO-204ENST00000519664 LYSMD2Q8IV50 215 aa10.9□□□□□ -0.67
SYNPO-204ENST00000519664 ZNF511Q8NB15 262 aa10.9□□□□□ -0.67
SYNPO-204ENST00000519664 ZNF784Q8NCA9 323 aaPredicted RBP10.9□□□□□ -0.67
SYNPO-204ENST00000519664 GHSRQ92847 366 aa10.9□□□□□ -0.67
SYNPO-204ENST00000519664 FAM46BQ96A09 425 aa10.9□□□□□ -0.67
SYNPO-204ENST00000519664 THAP10Q9P2Z0 257 aaPredicted RBP10.9□□□□□ -0.67
SYNPO-204ENST00000519664 ANKRD31Q8N7Z5 1873 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 TEX13DA0A0J9YY54 714 aaPredicted RBP10.89□□□□□ -0.67
SYNPO-204ENST00000519664 ATP6V1G2-DDX39BF2Z307 99 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 YY2O15391 372 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 LDOC1O95751 146 aaPredicted RBP10.89□□□□□ -0.67
SYNPO-204ENST00000519664 SCG5P05408 212 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 FRKP42685 505 aaPredicted RBP10.89□□□□□ -0.67
SYNPO-204ENST00000519664 DUSP5Q16690 384 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 SLC48A1Q6P1K1 146 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 THAP6Q8TBB0 222 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 NMNAT3Q96T66 252 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 KATNB1Q9BVA0 655 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 ZNF304Q9HCX3 659 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 SEMA4GQ9NTN9 838 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 PPP4R1LQ9P1A2 415 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 NEU3Q9UQ49 428 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 POLHQ9Y253 713 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 ENTPD2Q9Y5L3 495 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 PRAMEF26H0Y7S4 382 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 DUX1O43812 170 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 HYAL3O43820 417 aaPredicted RBP10.89□□□□□ -0.67
SYNPO-204ENST00000519664 GPX5O75715 221 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 CPNE6O95741 557 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 IL1AP01583 271 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 RIDAP52758 137 aaKnown RBP10.89□□□□□ -0.67
SYNPO-204ENST00000519664 CLRN1P58418 232 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 TRA2BP62995 288 aaKnown RBP10.89□□□□□ -0.67
SYNPO-204ENST00000519664 SYT14P1Q58G82 188 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 TMEM215Q68D42 235 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 PITX2Q99697 317 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 UBQLN3Q9H347 655 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 TMEFF2Q9UIK5 374 aaPredicted RBP10.89□□□□□ -0.67
SYNPO-204ENST00000519664 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 SEC14L5O43304 696 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 PDGFAP04085 211 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 POU4F2Q12837 409 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 P2RY14Q15391 338 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 TRAM1Q15629 374 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 GRK1Q15835 563 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 ULK3Q6PHR2 472 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 ZNF322Q6U7Q0 402 aaPredicted RBP10.89□□□□□ -0.67
SYNPO-204ENST00000519664 IDO2Q6ZQW0 420 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 GDF7Q7Z4P5 450 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 SYT9Q86SS6 491 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 CNOT9Q92600 299 aaKnown RBP10.89□□□□□ -0.67
SYNPO-204ENST00000519664 MS4A6EQ96DS6 147 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 ALG14Q96F25 216 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 C7orf34Q96L11 122 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 EPHX3Q9H6B9 360 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 FOLH1BQ9HBA9 442 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 HPF1Q9NWY4 346 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 CD207Q9UJ71 328 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 SLC35A3Q9Y2D2 325 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 CCDC88CQ9P219 2028 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 TMEM72A0PK05 275 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 SLC16A7O60669 478 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 APOC3P02656 99 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 EPHA5P54756 1037 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 STK11Q15831 433 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 PYHIN1Q6K0P9 492 aa10.89□□□□□ -0.67
SYNPO-204ENST00000519664 ZNF584Q8IVC4 421 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms